3kg9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:14, 6 September 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3kg9.png|left|200px]]
 
-
<!--
+
==Dehydratase domain from CurK module of Curacin polyketide synthase==
-
The line below this paragraph, containing "STRUCTURE_3kg9", creates the "Structure Box" on the page.
+
<StructureSection load='3kg9' size='340' side='right'caption='[[3kg9]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3kg9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lyngbya_majuscula Lyngbya majuscula]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KG9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KG9 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kg9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kg9 OCA], [https://pdbe.org/3kg9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kg9 RCSB], [https://www.ebi.ac.uk/pdbsum/3kg9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kg9 ProSAT]</span></td></tr>
-
{{STRUCTURE_3kg9| PDB=3kg9 | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q6DNE2_9CYAN Q6DNE2_9CYAN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kg/3kg9_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kg9 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Modular polyketide synthases (PKS) make novel natural products through a series of preprogrammed chemical steps catalyzed by an assembly line of multidomain modules. Each assembly-line step involves unique extension and modification reactions, resulting in tremendous diversity of polyketide products. Dehydratase domains catalyze formation of an alpha,beta-double bond in the nascent polyketide intermediate. We present crystal structures of the four dehydratase domains from the curacin A PKS. The catalytic residues and substrate binding site reside in a tunnel within a single monomer. The positions of the catalytic residues and shape of the substrate tunnel explain how chirality of the substrate hydroxyl group may determine the configuration of the product double bond. Access to the active site may require opening the substrate tunnel, forming an open trench. The arrangement of monomers within the dimer is consistent among PKS dehydratases and differs from that seen in the related mammalian fatty acid synthases.
-
===Dehydratase domain from CurK module of Curacin polyketide synthase===
+
Crystal structures of dehydratase domains from the curacin polyketide biosynthetic pathway.,Akey DL, Razelun JR, Tehranisa J, Sherman DH, Gerwick WH, Smith JL Structure. 2010 Jan 13;18(1):94-105. PMID:20152156<ref>PMID:20152156</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_20152156}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 3kg9" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20152156 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_20152156}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
3KG9 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Lyngbya_majuscula Lyngbya majuscula]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KG9 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:20152156</ref><references group="xtra"/>
+
[[Category: Lyngbya majuscula]]
[[Category: Lyngbya majuscula]]
-
[[Category: Akey, D L.]]
+
[[Category: Akey DL]]
-
[[Category: Smith, J L.]]
+
[[Category: Smith JL]]
-
[[Category: Dehydratase]]
+
-
[[Category: Double hotdog fold]]
+
-
[[Category: Lyase]]
+
-
[[Category: Polyketide synthase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 3 13:06:44 2010''
+

Current revision

Dehydratase domain from CurK module of Curacin polyketide synthase

PDB ID 3kg9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools