This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1a0e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:26, 7 February 2024) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1a0e.gif|left|200px]]<br /><applet load="1a0e" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1a0e, resolution 2.7&Aring;" />
 
-
'''XYLOSE ISOMERASE FROM THERMOTOGA NEAPOLITANA'''<br />
 
-
==About this Structure==
+
==XYLOSE ISOMERASE FROM THERMOTOGA NEAPOLITANA==
-
1A0E is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_neapolitana Thermotoga neapolitana] with CO as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] Known structural/functional Sites: <scene name='pdbsite=CO1:Co Binding Site 1 Of Molecule A'>CO1</scene>, <scene name='pdbsite=CO2:Co Binding Site 2 Of Molecule A (Hoh629 Was Added After ...'>CO2</scene>, <scene name='pdbsite=CO3:Co Binding Site 3 Of Molecule A (Site Co3 Is On A Crysta ...'>CO3</scene>, <scene name='pdbsite=CO4:Co Binding Site 1 Of Molecule D'>CO4</scene>, <scene name='pdbsite=CO5:Co Binding Site 2 Of Molecule D (Hoh629 Was Added After ...'>CO5</scene> and <scene name='pdbsite=CO6:Co Binding Site 3 Of Molecule D (Site Co3 Is On A Crysta ...'>CO6</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1A0E OCA].
+
<StructureSection load='1a0e' size='340' side='right'caption='[[1a0e]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
[[Category: Single protein]]
+
== Structural highlights ==
-
[[Category: Thermotoga neapolitana]]
+
<table><tr><td colspan='2'>[[1a0e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_neapolitana Thermotoga neapolitana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A0E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1A0E FirstGlance]. <br>
-
[[Category: Xylose isomerase]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
[[Category: Blow, D.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene></td></tr>
-
[[Category: Brick, P.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1a0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a0e OCA], [https://pdbe.org/1a0e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1a0e RCSB], [https://www.ebi.ac.uk/pdbsum/1a0e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1a0e ProSAT]</span></td></tr>
-
[[Category: Chopra, R.]]
+
</table>
-
[[Category: Conti, E.]]
+
== Function ==
-
[[Category: Gallay, O.]]
+
[https://www.uniprot.org/uniprot/XYLA_THENE XYLA_THENE]
-
[[Category: CO]]
+
== Evolutionary Conservation ==
-
[[Category: alpha-beta barrel]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: glucose-fructose interconversion]]
+
Check<jmol>
-
[[Category: hydride transfer]]
+
<jmolCheckbox>
-
[[Category: ketolisomerase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a0e_consurf.spt"</scriptWhenChecked>
-
[[Category: metalloenzyme]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: thermophile]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: xylose metabolism]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1a0e ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 14:06:48 2007''
+
==See Also==
 +
*[[D-xylose isomerase 3D structures|D-xylose isomerase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermotoga neapolitana]]
 +
[[Category: Blow D]]
 +
[[Category: Brick P]]
 +
[[Category: Chopra R]]
 +
[[Category: Conti E]]
 +
[[Category: Gallay O]]

Current revision

XYLOSE ISOMERASE FROM THERMOTOGA NEAPOLITANA

PDB ID 1a0e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1a0e"
Personal tools