3ksq

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{{Seed}}
 
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[[Image:3ksq.png|left|200px]]
 
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==Discovery of C-Imidazole Azaheptapyridine FPT Inhibitors==
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The line below this paragraph, containing "STRUCTURE_3ksq", creates the "Structure Box" on the page.
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<StructureSection load='3ksq' size='340' side='right'caption='[[3ksq]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3ksq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KSQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KSQ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FPP:FARNESYL+DIPHOSPHATE'>FPP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=Z96:TERT-BUTYL+4-{(11S)-8-CHLORO-6-[(R)-HYDROXY(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]-11H-BENZO[5,6]CYCLOHEPTA[1,2-B]PYRIDIN-11-YL}PIPERAZINE-1-CARBOXYLATE'>Z96</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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{{STRUCTURE_3ksq| PDB=3ksq | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ksq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ksq OCA], [https://pdbe.org/3ksq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ksq RCSB], [https://www.ebi.ac.uk/pdbsum/3ksq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ksq ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/FNTA_RAT FNTA_RAT] Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/3ksq_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ksq ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The discovery of C-linked imidazole azaheptapyridine bridgehead FPT inhibitors is described. This novel class of compounds are sub nM FPT enzyme inhibitors with potent cellular inhibitory activities. This series also has reduced hERG activity versus previous N-linked imidazole series. X-ray of compound 10a bound to FTase revealed strong interaction between bridgehead imidazole 3N with catalytic zinc atom.
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===Discovery of C-Imidazole Azaheptapyridine FPT Inhibitors===
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Discovery of C-imidazole azaheptapyridine FPT inhibitors.,Zhu HY, Cooper AB, Desai J, Njoroge G, Kirschmeier P, Bishop WR, Strickland C, Hruza A, Doll RJ, Girijavallabhan VM Bioorg Med Chem Lett. 2010 Feb 1;20(3):1134-6. Epub 2009 Dec 6. PMID:20056542<ref>PMID:20056542</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3ksq" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20056542}}, adds the Publication Abstract to the page
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*[[Farnesyltransferase 3D structures|Farnesyltransferase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20056542 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20056542}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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3KSQ is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KSQ OCA].
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==Reference==
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<ref group="xtra">PMID:20056542</ref><references group="xtra"/>
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[[Category: Protein farnesyltransferase]]
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[[Category: Rattus norvegicus]]
[[Category: Rattus norvegicus]]
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[[Category: Cooper, A B.]]
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[[Category: Cooper AB]]
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[[Category: Girijavallabhan, V M.]]
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[[Category: Girijavallabhan VM]]
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[[Category: Hruza, A.]]
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[[Category: Hruza A]]
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[[Category: Kirschmeier, P.]]
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[[Category: Kirschmeier P]]
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[[Category: Njoroge, G.]]
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[[Category: Njoroge G]]
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[[Category: Strickland, C.]]
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[[Category: Strickland C]]
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[[Category: Zhu, H Y.]]
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[[Category: Zhu HY]]
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[[Category: Metal-binding]]
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[[Category: Phosphoprotein]]
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[[Category: Prenyltransferase]]
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[[Category: Transferase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 3 14:07:13 2010''
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Current revision

Discovery of C-Imidazole Azaheptapyridine FPT Inhibitors

PDB ID 3ksq

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