This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3a9f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:00, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3a9f.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the C-terminal domain of cytochrome cz from Chlorobium tepidum==
-
The line below this paragraph, containing "STRUCTURE_3a9f", creates the "Structure Box" on the page.
+
<StructureSection load='3a9f' size='340' side='right'caption='[[3a9f]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3a9f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlorobaculum_tepidum Chlorobaculum tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A9F FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3a9f| PDB=3a9f | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a9f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9f OCA], [https://pdbe.org/3a9f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a9f RCSB], [https://www.ebi.ac.uk/pdbsum/3a9f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a9f ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CY551_CHLTE CY551_CHLTE] Monoheme cytochrome which is the immediate electron donor to P840 of the photosynthetic reaction center complex.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/3a9f_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a9f ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of the C-terminal domain of cytochrome cz from Chlorobium tepidum===
+
==See Also==
-
 
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_20156447}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 20156447 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_20156447}}
+
-
 
+
-
==About this Structure==
+
-
3A9F is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Chlorobaculum_tepidum Chlorobaculum tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9F OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:20156447</ref><references group="xtra"/>
+
[[Category: Chlorobaculum tepidum]]
[[Category: Chlorobaculum tepidum]]
-
[[Category: Azai, C.]]
+
[[Category: Large Structures]]
-
[[Category: Higuchi, M.]]
+
[[Category: Azai C]]
-
[[Category: Hirano, Y.]]
+
[[Category: Higuchi M]]
-
[[Category: Miki, K.]]
+
[[Category: Hirano Y]]
-
[[Category: Oh-oka, H.]]
+
[[Category: Miki K]]
-
[[Category: Wang, Z Y.]]
+
[[Category: Oh-oka H]]
-
[[Category: Alpha helix]]
+
[[Category: Wang Z-Y]]
-
[[Category: Cytochrome]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Mono heme]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 3 16:31:23 2010''
+

Current revision

Crystal structure of the C-terminal domain of cytochrome cz from Chlorobium tepidum

PDB ID 3a9f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3a9f"
Personal tools