This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gdc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:54, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3gdc.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of multicopper oxidase==
-
The line below this paragraph, containing "STRUCTURE_3gdc", creates the "Structure Box" on the page.
+
<StructureSection load='3gdc' size='340' side='right'caption='[[3gdc]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3gdc]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_sp._FB24 Arthrobacter sp. FB24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GDC FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
-
{{STRUCTURE_3gdc| PDB=3gdc | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gdc OCA], [https://pdbe.org/3gdc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gdc RCSB], [https://www.ebi.ac.uk/pdbsum/3gdc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gdc ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0AW19_ARTS2 A0AW19_ARTS2]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/3gdc_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gdc ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of multicopper oxidase===
+
==See Also==
-
 
+
*[[Laccase 3D structures|Laccase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3GDC is a 3 chains structure with sequences from [http://en.wikipedia.org/wiki/Arthrobacter_sp._fb24 Arthrobacter sp. fb24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GDC OCA].
+
[[Category: Arthrobacter sp. FB24]]
-
[[Category: Arthrobacter sp. fb24]]
+
[[Category: Large Structures]]
-
[[Category: Laccase]]
+
[[Category: Lee WC]]
-
[[Category: Lee, W C.]]
+
[[Category: Liang TI]]
-
[[Category: Liang, T I.]]
+
[[Category: MacPherson IS]]
-
[[Category: MacPherson, I S.]]
+
[[Category: Murphy MEP]]
-
[[Category: Murphy, M E.P.]]
+
-
[[Category: Beta sandwich]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Plasmid]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 10 14:28:45 2010''
+

Current revision

Crystal structure of multicopper oxidase

PDB ID 3gdc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools