This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3lwz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:45, 6 September 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3lwz.jpg|left|200px]]
 
-
<!--
+
==1.65 Angstrom Resolution Crystal Structure of Type II 3-Dehydroquinate Dehydratase (aroQ) from Yersinia pestis==
-
The line below this paragraph, containing "STRUCTURE_3lwz", creates the "Structure Box" on the page.
+
<StructureSection load='3lwz' size='340' side='right'caption='[[3lwz]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3lwz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_CO92 Yersinia pestis CO92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LWZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LWZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
{{STRUCTURE_3lwz| PDB=3lwz | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lwz OCA], [https://pdbe.org/3lwz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lwz RCSB], [https://www.ebi.ac.uk/pdbsum/3lwz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lwz ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AROQ_YERPE AROQ_YERPE] Catalyzes a trans-dehydration via an enolate intermediate (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lw/3lwz_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lwz ConSurf].
 +
<div style="clear:both"></div>
-
===1.65 Angstrom Resolution Crystal Structure of Type II 3-Dehydroquinate Dehydratase (aroQ) from Yersinia pestis===
+
==See Also==
-
 
+
*[[Dehydroquinase 3D structures|Dehydroquinase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3LWZ is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LWZ OCA].
+
[[Category: Large Structures]]
-
[[Category: 3-dehydroquinate dehydratase]]
+
[[Category: Yersinia pestis CO92]]
-
[[Category: Yersinia pestis]]
+
[[Category: Anderson WF]]
-
[[Category: Anderson, W F.]]
+
[[Category: Dubrovska I]]
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
[[Category: Light SH]]
-
[[Category: Dubrovska, I.]]
+
[[Category: Minasov G]]
-
[[Category: Light, S H.]]
+
[[Category: Papazisi L]]
-
[[Category: Minasov, G.]]
+
[[Category: Shuvalova L]]
-
[[Category: Papazisi, L.]]
+
[[Category: Winsor J]]
-
[[Category: Shuvalova, L.]]
+
-
[[Category: Winsor, J.]]
+
-
[[Category: Amino-acid biosynthesis]]
+
-
[[Category: Aromatic amino acid biosynthesis]]
+
-
[[Category: Aroq]]
+
-
[[Category: Center for structural genomics of infectious disease]]
+
-
[[Category: Csgid]]
+
-
[[Category: Idp90771]]
+
-
[[Category: Lyase]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Type ii 3-dehydroquinate dehydratase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 10 14:53:54 2010''
+

Current revision

1.65 Angstrom Resolution Crystal Structure of Type II 3-Dehydroquinate Dehydratase (aroQ) from Yersinia pestis

PDB ID 3lwz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools