3k5b

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{{Seed}}
 
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[[Image:3k5b.png|left|200px]]
 
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==Crystal structure of the peripheral stalk of Thermus thermophilus H+-ATPase/synthase==
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The line below this paragraph, containing "STRUCTURE_3k5b", creates the "Structure Box" on the page.
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<StructureSection load='3k5b' size='340' side='right'caption='[[3k5b]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3k5b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K5B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K5B FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_3k5b| PDB=3k5b | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k5b OCA], [https://pdbe.org/3k5b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k5b RCSB], [https://www.ebi.ac.uk/pdbsum/3k5b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k5b ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q5SIT5_THET8 Q5SIT5_THET8]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/3k5b_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k5b ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Proton-translocating ATPases are ubiquitous protein complexes that couple ATP catalysis with proton translocation via a rotary catalytic mechanism. The peripheral stalks are essential components that counteract torque generated from proton translocation during ATP synthesis or from ATP hydrolysis during proton pumping. Despite their essential role, the peripheral stalks are the least conserved component of the complexes, differing substantially between subtypes in composition and stoichiometry. We have determined the crystal structure of the peripheral stalk of the A-type ATPase/synthase from Thermus thermophilus consisting of subunits E and G. The structure contains a heterodimeric right-handed coiled coil, a protein fold never observed before. We have fitted this structure into the 23 A resolution EM density of the intact A-ATPase complex, revealing the precise location of the peripheral stalk and new implications for the function and assembly of proton-translocating ATPases.
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===Crystal structure of the peripheral stalk of Thermus thermophilus H+-ATPase/synthase===
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The structure of the peripheral stalk of Thermus thermophilus H+-ATPase/synthase.,Lee LK, Stewart AG, Donohoe M, Bernal RA, Stock D Nat Struct Mol Biol. 2010 Mar;17(3):373-8. Epub 2010 Feb 21. PMID:20173764<ref>PMID:20173764</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3k5b" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20173764}}, adds the Publication Abstract to the page
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*[[ATPase 3D structures|ATPase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20173764 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20173764}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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3K5B is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K5B OCA].
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[[Category: Thermus thermophilus HB8]]
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[[Category: Bernal RA]]
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==Reference==
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[[Category: Donohoe M]]
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<ref group="xtra">PMID:20173764</ref><references group="xtra"/>
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[[Category: Lee LK]]
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[[Category: Thermus thermophilus hb8]]
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[[Category: Stewart AG]]
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[[Category: Bernal, R A.]]
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[[Category: Stock D]]
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[[Category: Donohoe, M.]]
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[[Category: Lee, L K.]]
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[[Category: Stewart, A G.]]
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[[Category: Stock, D.]]
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[[Category: A-type atpase/synthase]]
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[[Category: Atp synthesis]]
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[[Category: Hydrogen ion transport]]
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[[Category: Hydrolase]]
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[[Category: Ion transport]]
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[[Category: Peripheral stalk]]
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[[Category: Peripheral stator]]
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[[Category: Right handed coiled coil]]
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[[Category: Transport]]
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[[Category: V-type atpase/synthase]]
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[[Category: Vacuolar atpase/synthase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 17 08:51:25 2010''
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Current revision

Crystal structure of the peripheral stalk of Thermus thermophilus H+-ATPase/synthase

PDB ID 3k5b

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