This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3luq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:39, 4 August 2016) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3luq.jpg|left|200px]]
 
-
<!--
+
==The Crystal Structure of a PAS Domain from a Sensory Box Histidine Kinase Regulator from Geobacter sulfurreducens to 2.5A==
-
The line below this paragraph, containing "STRUCTURE_3luq", creates the "Structure Box" on the page.
+
<StructureSection load='3luq' size='340' side='right' caption='[[3luq]], [[Resolution|resolution]] 2.49&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3luq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geosl Geosl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LUQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LUQ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3luq| PDB=3luq | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GSU1414 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243231 GEOSL])</td></tr>
-
 
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
-
===The Crystal Structure of a PAS Domain from a Sensory Box Histidine Kinase Regulator from Geobacter sulfurreducens to 2.5A===
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3luq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3luq OCA], [http://pdbe.org/3luq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3luq RCSB], [http://www.ebi.ac.uk/pdbsum/3luq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3luq ProSAT]</span></td></tr>
-
 
+
</table>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3LUQ is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Geobacter_sulfurreducens Geobacter sulfurreducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LUQ OCA].
+
Check<jmol>
-
[[Category: Geobacter sulfurreducens]]
+
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lu/3luq_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3luq ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Geosl]]
[[Category: Histidine kinase]]
[[Category: Histidine kinase]]
-
[[Category: Clancy, S.]]
+
[[Category: Clancy, S]]
-
[[Category: Duggan, E.]]
+
[[Category: Duggan, E]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Joachimiak, A]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Structural genomic]]
-
[[Category: Stein, A J.]]
+
[[Category: Stein, A J]]
-
[[Category: Weger, A.]]
+
[[Category: Weger, A]]
[[Category: Atp-binding]]
[[Category: Atp-binding]]
[[Category: Geobacter]]
[[Category: Geobacter]]
Line 28: Line 35:
[[Category: Kinase]]
[[Category: Kinase]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
 
[[Category: Nucleotide-binding]]
[[Category: Nucleotide-binding]]
[[Category: Pa]]
[[Category: Pa]]
[[Category: Phosphoprotein]]
[[Category: Phosphoprotein]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
[[Category: Sulfurreducen]]
[[Category: Sulfurreducen]]
[[Category: Transferase]]
[[Category: Transferase]]
[[Category: Two-component regulatory system]]
[[Category: Two-component regulatory system]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 17 09:47:14 2010''
 

Current revision

The Crystal Structure of a PAS Domain from a Sensory Box Histidine Kinase Regulator from Geobacter sulfurreducens to 2.5A

3luq, resolution 2.49Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools