This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3lys

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:39, 13 October 2021) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3lys.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of the N-terminal domain of the Prophage pi2 protein 01 (integrase) from Lactococcus lactis, Northeast Structural Genomics Consortium Target KR124F==
-
The line below this paragraph, containing "STRUCTURE_3lys", creates the "Structure Box" on the page.
+
<StructureSection load='3lys' size='340' side='right'caption='[[3lys]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3lys]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/"lactococcus_lactis_subsp._diacitilactis_(sic)"_(garvie_and_farrow_1982)_schleifer_et_al._1986 "lactococcus lactis subsp. diacitilactis (sic)" (garvie and farrow 1982) schleifer et al. 1986]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LYS FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">int, L364, L36404, LL1008, pi201 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1360 "Lactococcus lactis subsp. diacitilactis (sic)" (Garvie and Farrow 1982) Schleifer et al. 1986])</td></tr>
-
{{STRUCTURE_3lys| PDB=3lys | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lys FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lys OCA], [https://pdbe.org/3lys PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lys RCSB], [https://www.ebi.ac.uk/pdbsum/3lys PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lys ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of the N-terminal domain of the Prophage pi2 protein 01 (integrase) from Lactococcus lactis, Northeast Structural Genomics Consortium Target KR124F===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3LYS is a 6 chains structure with sequences from [http://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYS OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/3lys_consurf.spt"</scriptWhenChecked>
-
[[Category: Lactococcus lactis]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Abashidze, M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Acton, T B.]]
+
</jmolCheckbox>
-
[[Category: Belote, R L.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lys ConSurf].
-
[[Category: Ciccosanti, C.]]
+
<div style="clear:both"></div>
-
[[Category: Everett, J K.]]
+
__TOC__
-
[[Category: Forouhar, F.]]
+
</StructureSection>
-
[[Category: Hunt, J F.]]
+
[[Category: Large Structures]]
-
[[Category: Montelione, G T.]]
+
[[Category: Abashidze, M]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Acton, T B]]
-
[[Category: Nair, R.]]
+
[[Category: Belote, R L]]
-
[[Category: Rost, B.]]
+
[[Category: Ciccosanti, C]]
-
[[Category: Sahdev, S.]]
+
[[Category: Everett, J K]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Forouhar, F]]
-
[[Category: Tong, L.]]
+
[[Category: Hunt, J F]]
-
[[Category: Xiao, R.]]
+
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Nair, R]]
 +
[[Category: Rost, B]]
 +
[[Category: Sahdev, S]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Tong, L]]
 +
[[Category: Xiao, R]]
[[Category: Helical n-terminal domain]]
[[Category: Helical n-terminal domain]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Recombination]]
[[Category: Recombination]]
-
[[Category: Structural genomic]]
 
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 17 09:48:52 2010''
 

Current revision

Crystal Structure of the N-terminal domain of the Prophage pi2 protein 01 (integrase) from Lactococcus lactis, Northeast Structural Genomics Consortium Target KR124F

PDB ID 3lys

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3lys"
Personal tools