3lq0

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{{Seed}}
 
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[[Image:3lq0.png|left|200px]]
 
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==Zymogen structure of crayfish astacin metallopeptidase==
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The line below this paragraph, containing "STRUCTURE_3lq0", creates the "Structure Box" on the page.
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<StructureSection load='3lq0' size='340' side='right'caption='[[3lq0]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3lq0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Astacus_astacus Astacus astacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LQ0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LQ0 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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{{STRUCTURE_3lq0| PDB=3lq0 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lq0 OCA], [https://pdbe.org/3lq0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lq0 RCSB], [https://www.ebi.ac.uk/pdbsum/3lq0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lq0 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ASTA_ASTAS ASTA_ASTAS] This protease prefers to cleave in front of small aliphatic residues (P1'). The presence of Lys or Arg in the P1 and P2 position yields high-turnover substrates. In the P3 position the enzyme prefers Pro > Val > Leu > Ala > Gly.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lq/3lq0_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lq0 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Proteolysis is regulated by inactive (latent) zymogens, with a prosegment preventing access of substrates to the active-site cleft of the enzyme. How latency is maintained often depends on the catalytic mechanism of the protease. For example, in several families of the metzincin metallopeptidases, a "cysteine switch" mechanism involves a conserved prosegment motif with a cysteine residue that coordinates the catalytic zinc ion. Another family of metzincins, the astacins, do not possess a cysteine switch, so latency is maintained by other means. We have solved the high resolution crystal structure of proastacin from the European crayfish, Astacus astacus. Its prosegment is the shortest structurally reported for a metallopeptidase, and it has a unique structure. It runs through the active-site cleft in reverse orientation to a genuine substrate. Moreover, a conserved aspartate, projected by a wide loop of the prosegment, coordinates the zinc ion instead of the catalytic solvent molecule found in the mature enzyme. Activation occurs through two-step limited proteolysis and entails major rearrangement of a flexible activation domain, which becomes rigid and creates the base of the substrate-binding cleft. Maturation also requires the newly formed N terminus to be precisely trimmed so that it can participate in a buried solvent-mediated hydrogen-bonding network, which includes an invariant active-site residue. We describe a novel mechanism for latency and activation, which shares some common features both with other metallopeptidases and with serine peptidases.
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===Zymogen structure of crayfish astacin metallopeptidase===
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Proenzyme structure and activation of astacin metallopeptidase.,Guevara T, Yiallouros I, Kappelhoff R, Bissdorf S, Stocker W, Gomis-Ruth FX J Biol Chem. 2010 Apr 30;285(18):13958-65. Epub 2010 Mar 4. PMID:20202938<ref>PMID:20202938</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3lq0" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20202938}}, adds the Publication Abstract to the page
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*[[Proteinase 3D structures|Proteinase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20202938 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20202938}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3LQ0 is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Astacus_astacus Astacus astacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LQ0 OCA].
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==Reference==
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<ref group="xtra">PMID:20202938</ref><references group="xtra"/>
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[[Category: Astacin]]
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[[Category: Astacus astacus]]
[[Category: Astacus astacus]]
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[[Category: Bissdorf, S.]]
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[[Category: Large Structures]]
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[[Category: Gomis-Ruth, F X.]]
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[[Category: Bissdorf S]]
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[[Category: Guevara, T.]]
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[[Category: Gomis-Ruth FX]]
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[[Category: Kappelhoff, R.]]
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[[Category: Guevara T]]
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[[Category: Stocker, W.]]
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[[Category: Kappelhoff R]]
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[[Category: Yiallouros, I.]]
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[[Category: Stocker W]]
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[[Category: Disulfide bond]]
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[[Category: Yiallouros I]]
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[[Category: Hydrolase]]
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[[Category: Metal-binding]]
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[[Category: Metallopeptidase]]
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[[Category: Metalloprotease]]
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[[Category: Proenzyme]]
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[[Category: Protease]]
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[[Category: Zinc]]
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[[Category: Zymogen]]
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[[Category: Zymogen activation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 24 08:26:45 2010''
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Current revision

Zymogen structure of crayfish astacin metallopeptidase

PDB ID 3lq0

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