1gt6

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[[Image:1gt6.gif|left|200px]]<br /><applet load="1gt6" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1gt6, resolution 2.2&Aring;" />
 
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'''S146A MUTANT OF THERMOMYCES (HUMICOLA) LANUGINOSA LIPASE COMPLEX WITH OLEIC ACID'''<br />
 
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==Overview==
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==S146A mutant of Thermomyces (Humicola) lanuginosa lipase complex with oleic acid==
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The binding of Thermomyces lanuginosa lipase and its mutants [TLL(S146A), TLL(W89L), TLL(W117F, W221H, W260H)] to the mixed micelles of, cis-parinaric acid/sodium taurodeoxycholate at pH 5.0 led to the quenching, of the intrinsic tryptophan fluorescence emission (300-380 nm) and to a, simultaneous increase in the cis-parinaric acid fluorescence emission, (380-500 nm). These findings were used to characterize the Thermomyces, lanuginosa lipase/cis-parinaric acid interactions occurring in the, presence of sodium taurodeoxycholate.The fluorescence resonance energy, transfer and Stern-Volmer quenching constant values obtained were, correlated with the accessibility of the tryptophan residues to the, cis-parinaric acid and with the lid opening ability of Thermomyces, lanuginosa lipase (and its mutants). TLL(S146A) was found to have the, highest fluorescence resonance energy transfer. In addition, a, TLL(S146A)/oleic acid complex was crystallised and its three-dimensional, structure was solved. Surprisingly, two possible binding modes (sn-1 and, antisn1) were found to exist between oleic acid and the catalytic cleft of, the open conformation of TLL(S146A). Both binding modes involved an, interaction with tryptophan 89 of the lipase lid, in agreement with, fluorescence resonance energy transfer experiments.As a consequence, we, concluded that TLL(S146A) mutant is not an appropriate substitute for the, wild-type Thermomyces lanuginosa lipase for mimicking the interaction, between the wild-type enzyme and lipids.
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<StructureSection load='1gt6' size='340' side='right'caption='[[1gt6]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1gt6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermomyces_lanuginosus Thermomyces lanuginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GT6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GT6 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OLA:OLEIC+ACID'>OLA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gt6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gt6 OCA], [https://pdbe.org/1gt6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gt6 RCSB], [https://www.ebi.ac.uk/pdbsum/1gt6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gt6 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/LIP_THELA LIP_THELA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gt/1gt6_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gt6 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The binding of Thermomyces lanuginosa lipase and its mutants [TLL(S146A), TLL(W89L), TLL(W117F, W221H, W260H)] to the mixed micelles of cis-parinaric acid/sodium taurodeoxycholate at pH 5.0 led to the quenching of the intrinsic tryptophan fluorescence emission (300-380 nm) and to a simultaneous increase in the cis-parinaric acid fluorescence emission (380-500 nm). These findings were used to characterize the Thermomyces lanuginosa lipase/cis-parinaric acid interactions occurring in the presence of sodium taurodeoxycholate.The fluorescence resonance energy transfer and Stern-Volmer quenching constant values obtained were correlated with the accessibility of the tryptophan residues to the cis-parinaric acid and with the lid opening ability of Thermomyces lanuginosa lipase (and its mutants). TLL(S146A) was found to have the highest fluorescence resonance energy transfer. In addition, a TLL(S146A)/oleic acid complex was crystallised and its three-dimensional structure was solved. Surprisingly, two possible binding modes (sn-1 and antisn1) were found to exist between oleic acid and the catalytic cleft of the open conformation of TLL(S146A). Both binding modes involved an interaction with tryptophan 89 of the lipase lid, in agreement with fluorescence resonance energy transfer experiments.As a consequence, we concluded that TLL(S146A) mutant is not an appropriate substitute for the wild-type Thermomyces lanuginosa lipase for mimicking the interaction between the wild-type enzyme and lipids.
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==About this Structure==
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Binding of Thermomyces (Humicola) lanuginosa lipase to the mixed micelles of cis-parinaric acid/NaTDC.,Yapoudjian S, Ivanova MG, Brzozowski AM, Patkar SA, Vind J, Svendsen A, Verger R Eur J Biochem. 2002 Mar;269(6):1613-21. PMID:11895431<ref>PMID:11895431</ref>
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1GT6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermomyces_lanuginosus Thermomyces lanuginosus] with OLA as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] Known structural/functional Site: <scene name='pdbsite=OLA:Ola Binding Site For Chain B'>OLA</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1GT6 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Binding of Thermomyces (Humicola) lanuginosa lipase to the mixed micelles of cis-parinaric acid/NaTDC., Yapoudjian S, Ivanova MG, Brzozowski AM, Patkar SA, Vind J, Svendsen A, Verger R, Eur J Biochem. 2002 Mar;269(6):1613-21. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11895431 11895431]
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</div>
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[[Category: Single protein]]
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<div class="pdbe-citations 1gt6" style="background-color:#fffaf0;"></div>
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[[Category: Thermomyces lanuginosus]]
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[[Category: Triacylglycerol lipase]]
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[[Category: Brzozowski, A.M.]]
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[[Category: Ivanova, M.G.]]
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[[Category: Patkar, S.A.]]
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[[Category: Svendsen, A.]]
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[[Category: Verger, R.]]
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[[Category: Vind, J.]]
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[[Category: Yapoudjian, S.]]
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[[Category: OLA]]
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[[Category: hydrolase]]
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[[Category: lipid degradation]]
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[[Category: zymogen]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 15:34:43 2007''
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==See Also==
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*[[Lipase 3D Structures|Lipase 3D Structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Thermomyces lanuginosus]]
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[[Category: Brzozowski AM]]
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[[Category: Ivanova MG]]
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[[Category: Patkar SA]]
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[[Category: Svendsen A]]
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[[Category: Verger R]]
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[[Category: Vind J]]
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[[Category: Yapoudjian S]]

Current revision

S146A mutant of Thermomyces (Humicola) lanuginosa lipase complex with oleic acid

PDB ID 1gt6

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