This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3m1x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:47, 6 September 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3m1x.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of a putative endoribonuclease L-PSP from Entamoeba histolytica, rhomobohedral form==
-
The line below this paragraph, containing "STRUCTURE_3m1x", creates the "Structure Box" on the page.
+
<StructureSection load='3m1x' size='340' side='right'caption='[[3m1x]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3m1x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Entamoeba_histolytica_HM-1:IMSS Entamoeba histolytica HM-1:IMSS]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M1X FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=MHO:S-OXYMETHIONINE'>MHO</scene></td></tr>
-
{{STRUCTURE_3m1x| PDB=3m1x | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m1x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m1x OCA], [https://pdbe.org/3m1x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m1x RCSB], [https://www.ebi.ac.uk/pdbsum/3m1x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m1x ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of a putative endoribonuclease L-PSP from Entamoeba histolytica, rhomobohedral form===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/C4LXT9_ENTH1 C4LXT9_ENTH1]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3M1X is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Entamoeba_histolytica Entamoeba histolytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1X OCA].
+
Check<jmol>
-
[[Category: Entamoeba histolytica]]
+
<jmolCheckbox>
-
[[Category: SSGCID, Seattle Structural Genomics Center for Infectious Disease.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m1/3m1x_consurf.spt"</scriptWhenChecked>
-
[[Category: Emerald biostructure]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Seattle structural genomics center for infectious disease]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Ssgcid]]
+
</jmolCheckbox>
-
[[Category: Structural genomic]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m1x ConSurf].
-
[[Category: Unknown function]]
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 13:55:09 2010''
+
</StructureSection>
 +
[[Category: Entamoeba histolytica HM-1:IMSS]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of a putative endoribonuclease L-PSP from Entamoeba histolytica, rhomobohedral form

PDB ID 3m1x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools