1gus

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[[Image:1gus.gif|left|200px]]<br /><applet load="1gus" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1gus, resolution 1.80&Aring;" />
 
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'''MOPII FROM CLOSTRIDIUM PASTEURIANUM (APO1)'''<br />
 
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==Overview==
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==MopII from Clostridium pasteurianum (apo1)==
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MopII from Clostridium pasteurianum is a molbindin family member. These, proteins may serve as intracellular storage facilities for molybdate, which they bind with high specificity. High resolution structures of MopII, in a number of states, including the first structure of an apo-molbindin, together with calorimetric data, allow us to describe ligand binding and, provide support for the proposed storage function of the protein. MopII, assembles as a trimer of dimers and binds eight oxyanions at two types of, binding sites located at intersubunit interfaces. Two type 1 sites are on, the molecular 3-fold axis and three pairs of type 2 sites occur on the, molecular 2-fold axes. The hexamer is largely unaffected by the binding of, ligand. Molybdate is admitted to the otherwise inaccessible type 2 binding, sites by the movement of the N-terminal residues of each protein chain., This contrasts with the structurally related molybdate-dependent, transcriptional regulator ModE, which undergoes extensive conformational, rearrangements on ligand binding. Despite similarities between the binding, sites of ModE and the type 2 sites of MopII the molbindin has a, significantly reduced ligand affinity, due, in part, to the high density, of negative charges at the center of the hexamer. In the absence of ligand, this effects the movement of an important lysine side chain, thereby, partially inactivating the binding sites. The differences are consistent, with a biological role in molybdate storage/buffering.
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<StructureSection load='1gus' size='340' side='right'caption='[[1gus]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1gus]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GUS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GUS FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gus FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gus OCA], [https://pdbe.org/1gus PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gus RCSB], [https://www.ebi.ac.uk/pdbsum/1gus PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gus ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MOP2_CLOPA MOP2_CLOPA] Binds one mole of molybdenum per mole of protein and contains a pterin.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gu/1gus_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gus ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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MopII from Clostridium pasteurianum is a molbindin family member. These proteins may serve as intracellular storage facilities for molybdate, which they bind with high specificity. High resolution structures of MopII in a number of states, including the first structure of an apo-molbindin, together with calorimetric data, allow us to describe ligand binding and provide support for the proposed storage function of the protein. MopII assembles as a trimer of dimers and binds eight oxyanions at two types of binding sites located at intersubunit interfaces. Two type 1 sites are on the molecular 3-fold axis and three pairs of type 2 sites occur on the molecular 2-fold axes. The hexamer is largely unaffected by the binding of ligand. Molybdate is admitted to the otherwise inaccessible type 2 binding sites by the movement of the N-terminal residues of each protein chain. This contrasts with the structurally related molybdate-dependent transcriptional regulator ModE, which undergoes extensive conformational rearrangements on ligand binding. Despite similarities between the binding sites of ModE and the type 2 sites of MopII the molbindin has a significantly reduced ligand affinity, due, in part, to the high density of negative charges at the center of the hexamer. In the absence of ligand this effects the movement of an important lysine side chain, thereby partially inactivating the binding sites. The differences are consistent with a biological role in molybdate storage/buffering.
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==About this Structure==
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Passive acquisition of ligand by the MopII molbindin from Clostridium pasteurianum: structures of apo and oxyanion-bound forms.,Schuttelkopf AW, Harrison JA, Boxer DH, Hunter WN J Biol Chem. 2002 Apr 26;277(17):15013-20. Epub 2002 Feb 8. PMID:11836258<ref>PMID:11836258</ref>
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1GUS is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum] with MG and CL as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Site: <scene name='pdbsite=T11:Type 2 Binding Site'>T11</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1GUS OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Passive acquisition of ligand by the MopII molbindin from Clostridium pasteurianum: structures of apo and oxyanion-bound forms., Schuttelkopf AW, Harrison JA, Boxer DH, Hunter WN, J Biol Chem. 2002 Apr 26;277(17):15013-20. Epub 2002 Feb 8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11836258 11836258]
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</div>
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[[Category: Clostridium pasteurianum]]
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<div class="pdbe-citations 1gus" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Harrison, J.A.]]
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[[Category: Hunter, W.N.]]
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[[Category: Schuettelkopf, A.W.]]
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[[Category: CL]]
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[[Category: MG]]
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[[Category: molbindin]]
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[[Category: molybdate binding]]
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[[Category: mop]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 15:37:45 2007''
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==See Also==
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*[[Glutathione S-transferase 3D structures|Glutathione S-transferase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Clostridium pasteurianum]]
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[[Category: Large Structures]]
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[[Category: Harrison JA]]
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[[Category: Hunter WN]]
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[[Category: Schuettelkopf AW]]

Current revision

MopII from Clostridium pasteurianum (apo1)

PDB ID 1gus

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