1gy1

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[[Image:1gy1.gif|left|200px]]<br /><applet load="1gy1" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1gy1, resolution 1.65&Aring;" />
 
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'''CRYSTAL STRUCTURES OF SER86ASP AND MET148LEU RUSTICYANIN'''<br />
 
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==Overview==
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==Crystal structures of Ser86Asp and Met148Leu Rusticyanin==
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The crystal structures of the Met148Leu and Ser86Asp mutants of, rusticyanin are presented at 1.82 and 1.65 A resolution, respectively., Both of these structures have two molecules in the asymmetric unit, compared to the one present in the crystal form of the native protein., This provides an opportunity to investigate intramolecular electron, transfer pathways in rusticyanin. The redox potential of the Met148Leu, mutant ( approximately 800 mV) is elevated compared to that of the native, protein ( approximately 670 mV at pH 3.2) while that of the Ser86Asp, mutant ( approximately 623 mV at pH 3.2) is decreased. The effect of the, Ser86Asp mutation on the hydrogen bonding near the type 1 Cu site is, discussed and hence its role in determining acid stability is examined., The type 1 Cu site of Met148Leu mimics the structural and biochemical, characteristics of those found in domain II of ceruloplasmin and fungal, laccase. Moreover, the native rusticyanin's cupredoxin core and the type 1, Cu site closely resemble those found in ascorbate oxidase and nitrite, reductase. Structure based phylogenetic trees have been re-examined in, view of the additional structural data on rusticyanin and fungal laccase., We confirm that rusticyanin is in the same class as nitrite reductase, domain 2, laccase domain 3 and ceruloplasmin domains 2, 4 and 6.
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<StructureSection load='1gy1' size='340' side='right'caption='[[1gy1]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1gy1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acidithiobacillus_ferrooxidans Acidithiobacillus ferrooxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GY1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GY1 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gy1 OCA], [https://pdbe.org/1gy1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gy1 RCSB], [https://www.ebi.ac.uk/pdbsum/1gy1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gy1 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RUS2_ACIFI RUS2_ACIFI] Electron carrier from cytochrome c552 to the A-type oxidase.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/1gy1_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gy1 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The crystal structures of the Met148Leu and Ser86Asp mutants of rusticyanin are presented at 1.82 and 1.65 A resolution, respectively. Both of these structures have two molecules in the asymmetric unit compared to the one present in the crystal form of the native protein. This provides an opportunity to investigate intramolecular electron transfer pathways in rusticyanin. The redox potential of the Met148Leu mutant ( approximately 800 mV) is elevated compared to that of the native protein ( approximately 670 mV at pH 3.2) while that of the Ser86Asp mutant ( approximately 623 mV at pH 3.2) is decreased. The effect of the Ser86Asp mutation on the hydrogen bonding near the type 1 Cu site is discussed and hence its role in determining acid stability is examined. The type 1 Cu site of Met148Leu mimics the structural and biochemical characteristics of those found in domain II of ceruloplasmin and fungal laccase. Moreover, the native rusticyanin's cupredoxin core and the type 1 Cu site closely resemble those found in ascorbate oxidase and nitrite reductase. Structure based phylogenetic trees have been re-examined in view of the additional structural data on rusticyanin and fungal laccase. We confirm that rusticyanin is in the same class as nitrite reductase domain 2, laccase domain 3 and ceruloplasmin domains 2, 4 and 6.
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==About this Structure==
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Crystal structures of the Met148Leu and Ser86Asp mutants of rusticyanin from Thiobacillus ferrooxidans: insights into the structural relationship with the cupredoxins and the multi copper proteins.,Kanbi LD, Antonyuk S, Hough MA, Hall JF, Dodd FE, Hasnain SS J Mol Biol. 2002 Jul 5;320(2):263-75. PMID:12079384<ref>PMID:12079384</ref>
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1GY1 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Acidithiobacillus_ferrooxidans Acidithiobacillus ferrooxidans] with CU as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Site: <scene name='pdbsite=CUA:Cu Binding Site For Chain B'>CUA</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1GY1 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structures of the Met148Leu and Ser86Asp mutants of rusticyanin from Thiobacillus ferrooxidans: insights into the structural relationship with the cupredoxins and the multi copper proteins., Kanbi LD, Antonyuk S, Hough MA, Hall JF, Dodd FE, Hasnain SS, J Mol Biol. 2002 Jul 5;320(2):263-75. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12079384 12079384]
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</div>
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<div class="pdbe-citations 1gy1" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Acidithiobacillus ferrooxidans]]
[[Category: Acidithiobacillus ferrooxidans]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Antonyuk, S.]]
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[[Category: Antonyuk S]]
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[[Category: Dodd, F.]]
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[[Category: Dodd F]]
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[[Category: Hasnain, S.]]
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[[Category: Hasnain S]]
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[[Category: Hough, M.A.]]
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[[Category: Hough MA]]
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[[Category: Kanbi, L.D.]]
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[[Category: Kanbi LD]]
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[[Category: CU]]
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[[Category: electron transport]]
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[[Category: m148l]]
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[[Category: metal-binding]]
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[[Category: mutant]]
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[[Category: periplasmic]]
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[[Category: rusticyanin]]
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[[Category: s86d]]
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[[Category: signal]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 15:44:34 2007''
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Current revision

Crystal structures of Ser86Asp and Met148Leu Rusticyanin

PDB ID 1gy1

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