1gqx

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{{Theoretical_model}}
{{Theoretical_model}}
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{{Seed}}
 
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[[Image:1gqx.png|left|200px]]
 
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==MODELLED STRUCTURE OF 2,4-DICHLOROPHENOXYACETIC ACID/ ALPHA- KETOGLUTARATE DIOXYGENASE==
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The line below this paragraph, containing "STRUCTURE_1gqx", creates the "Structure Box" on the page.
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<StructureSection load='1gqx' size='340' side='right'caption='[[1gqx]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GQX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gqx FirstGlance], [https://www.ebi.ac.uk/pdbsum/1gqx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gqx ProSAT]</span></td></tr>
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</table>
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{{STRUCTURE_1gqx| PDB=1gqx | SCENE= }}
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Taurine/alpha-ketoglutarate dioxygenase (TauD), a non-heme Fe(II) oxygenase, catalyses the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrent with the conversion of alpha-ketoglutarate (alphaKG) to succinate and CO(2). The enzyme allows Escherichia coli to use taurine, widely available in the environment, as an alternative sulfur source. Here we describe the X-ray crystal structure of TauD complexed to Fe(II) and both substrates, alphaKG and taurine. The tertiary structure and fold of TauD are similar to those observed in other enzymes from the broad family of Fe(II)/alphaKG-dependent oxygenases, with closest structural similarity to clavaminate synthase. Using the TauD coordinates, a model was determined for the closely related enzyme 2,4-dichlorophenoxyacetate/alphaKG dioxygenase (TfdA), supporting predictions derived from site-directed mutagenesis and other studies of that biodegradative protein. The TauD structure and TfdA model define the metal ligands and the positions of nearby aromatic residues that undergo post-translational modifications involving self-hydroxylation reactions. The substrate binding residues of TauD were identified and those of TfdA predicted. These results, along with sequence alignment information, reveal how TauD selects a tetrahedral substrate anion in preference to the planar carboxylate selected by TfdA, providing insight into the mechanism of enzyme catalysis.
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===MODELLED STRUCTURE OF 2,4-DICHLOROPHENOXYACETIC ACID/ ALPHA- KETOGLUTARATE DIOXYGENASE===
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X-ray crystal structure of Escherichia coli taurine/alpha-ketoglutarate dioxygenase complexed to ferrous iron and substrates.,Elkins JM, Ryle MJ, Clifton IJ, Dunning Hotopp JC, Lloyd JS, Burzlaff NI, Baldwin JE, Hausinger RP, Roach PL Biochemistry. 2002 Apr 23;41(16):5185-92. PMID:11955067<ref>PMID:11955067</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_11955067}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1gqx" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 11955067 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_11955067}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Theoretical Model]]
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQX OCA].
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[[Category: Large Structures]]
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==Reference==
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<ref group="xtra">PMID:11955067</ref><references group="xtra"/>
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[[Category: Baldwin, J E]]
[[Category: Baldwin, J E]]
[[Category: Burzlaff, N I]]
[[Category: Burzlaff, N I]]
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[[Category: Roach, P L]]
[[Category: Roach, P L]]
[[Category: Ryle, M J]]
[[Category: Ryle, M J]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 06:35:42 2010''
 

Current revision

Theoretical Model: The protein structure described on this page was determined theoretically, and hence should be interpreted with caution.

MODELLED STRUCTURE OF 2,4-DICHLOROPHENOXYACETIC ACID/ ALPHA- KETOGLUTARATE DIOXYGENASE

PDB ID 1gqx

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