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1ium

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{{Theoretical_model}}
{{Theoretical_model}}
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[[Image:1ium.png|left|200px]]
 
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==LOV DOMAIN OF THE YTVA PROTEIN FROM BACILLUS SUBTILIS: A THEORETICAL MODEL==
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The line below this paragraph, containing "STRUCTURE_1ium", creates the "Structure Box" on the page.
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<StructureSection load='1ium' size='340' side='right'caption='[[1ium]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IUM FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ium FirstGlance], [https://www.ebi.ac.uk/pdbsum/1ium PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ium ProSAT]</span></td></tr>
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</table>
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{{STRUCTURE_1ium| PDB=1ium | SCENE= }}
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A prokaryotic protein, YtvA from Bacillus subtilis, was found to possess a light, oxygen, voltage (LOV) domain sharing high homology with the photoactive, flavin mononucleotide (FMN)-binding LOV domains of phototropins (phot), blue-light photoreceptors for phototropism in higher plants. Computer-based three-dimensional modeling suggests that YtvA-LOV binds FMN in a similar pocket as phot-LOVs. Recombinant YtvA indeed exhibits the same spectroscopical features and blue-light-induced photochemistry as phot-LOVs, with the reversible formation of a blue-shifted photoproduct, assigned to an FMN-cysteine thiol adduct (Thio383). By means of laser-flash photolysis and time-resolved optoacoustic experiments, we measured the quantum yield of formation for Thio383, Phi(Thio) = 0.49, and the enthalpy change, DeltaH(Thio) = 135 kJ/mol, with respect to the parent state. The formation of Thio383 is accompanied by a considerable volume contraction, DeltaV(Thio) = -13.5 ml/mol. Similar to phot-LOVs, Thio383 is formed from the decay of a red-shifted transient species, T650, within 2 micros. In both YtvA and free FMN, this transient has an enthalpy content of approximately 200 kJ/mol, and its formation is accompanied by a small contraction, DeltaV(T) approximately -1.5 ml/mol, supporting the assignment of T650 to the FMN triplet state, as suggested by spectroscopical evidences. These are the first studies indicating that phototropin-related, blue-light receptors may exist also in prokaryotes, besides constituting a steadily growing family in plants.
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===LOV DOMAIN OF THE YTVA PROTEIN FROM BACILLUS SUBTILIS: A THEORETICAL MODEL===
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First evidence for phototropin-related blue-light receptors in prokaryotes.,Losi A, Polverini E, Quest B, Gartner W Biophys J. 2002 May;82(5):2627-34. PMID:11964249<ref>PMID:11964249</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 1ium" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 11964249 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_11964249}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Theoretical Model]]
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUM OCA].
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[[Category: Large Structures]]
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==Reference==
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<ref group="xtra">PMID:11964249</ref><references group="xtra"/>
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[[Category: Losi, A]]
[[Category: Losi, A]]
[[Category: Polverini, E]]
[[Category: Polverini, E]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:24:17 2010''
 

Current revision

Theoretical Model: The protein structure described on this page was determined theoretically, and hence should be interpreted with caution.

LOV DOMAIN OF THE YTVA PROTEIN FROM BACILLUS SUBTILIS: A THEORETICAL MODEL

PDB ID 1ium

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