1y8s

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{{Theoretical_model}}
{{Theoretical_model}}
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[[Image:1y8s.png|left|200px]]
 
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==THEORETICAL MODEL OF THE PROTON-PROLINE SYMPORTER PROP==
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The line below this paragraph, containing "STRUCTURE_1y8s", creates the "Structure Box" on the page.
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<StructureSection load='1y8s' size='340' side='right'caption='[[1y8s]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y8S FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y8s FirstGlance], [https://www.ebi.ac.uk/pdbsum/1y8s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y8s ProSAT]</span></td></tr>
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</table>
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{{STRUCTURE_1y8s| PDB=1y8s | SCENE= }}
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Transporter ProP of Escherichia coli, a member of the major facilitator superfamily (MFS), acts as an osmosensor and an osmoregulator in cells and after purification and reconstitution in proteoliposomes. H(+)-osmoprotectant symport via ProP is activated when medium osmolality is elevated with membrane impermeant osmolytes. The three-dimensional structure of ProP was modeled with the crystal structure of MFS member GlpT as a template. This GlpT structure represents the inward (or cytoplasm)-facing conformation predicted by the alternating access model for transport. LacZ-PhoA fusion analysis and site-directed fluorescence labeling substantiated the membrane topology and orientation predicted by this model and most hydropathy analyses. The model predicts the presence of a proton pathway within the N-terminal six-helix bundle of ProP (as opposed to the corresponding pathway found within the C-terminal helix bundle of its paralogue, LacY). Replacement of residues within the N-terminal helix bundle impaired the osmotic activation of ProP, providing the first indication that residues outside the C-terminal domain are involved in osmosensing. Some residues that were accessible from the periplasmic side, as predicted by the structural model, were more susceptible to covalent labeling in permeabilized membrane fractions than in intact bacteria. These residues may be accessible from the cytoplasmic side in structures not represented by our current model, or their limited exposure in vivo may reflect constraints on transporter structure that are related to its osmosensory mechanism.
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===THEORETICAL MODEL OF THE PROTON-PROLINE SYMPORTER PROP===
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A structural model for the osmosensor, transporter, and osmoregulator ProP of Escherichia coli.,Wood JM, Culham DE, Hillar A, Vernikovska YI, Liu F, Boggs JM, Keates RA Biochemistry. 2005 Apr 19;44(15):5634-46. PMID:15823022<ref>PMID:15823022</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_15823022}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1y8s" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 15823022 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15823022}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Theoretical Model]]
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y8S OCA].
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[[Category: Large Structures]]
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==Reference==
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<ref group="xtra">PMID:15823022</ref><references group="xtra"/>
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[[Category: Boggs, J M]]
[[Category: Boggs, J M]]
[[Category: Culham, D E]]
[[Category: Culham, D E]]
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[[Category: Vernikovska, Y I]]
[[Category: Vernikovska, Y I]]
[[Category: Wood, J M]]
[[Category: Wood, J M]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:31:05 2010''
 

Current revision

Theoretical Model: The protein structure described on this page was determined theoretically, and hence should be interpreted with caution.

THEORETICAL MODEL OF THE PROTON-PROLINE SYMPORTER PROP

PDB ID 1y8s

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