1t2z

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{{Theoretical_model}}
{{Theoretical_model}}
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{{Seed}}
 
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[[Image:1t2z.png|left|200px]]
 
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==HUMAN MD-2 MODEL==
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The line below this paragraph, containing "STRUCTURE_1t2z", creates the "Structure Box" on the page.
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<StructureSection load='1t2z' size='340' side='right'caption='[[1t2z]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T2Z FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t2z FirstGlance], [https://www.ebi.ac.uk/pdbsum/1t2z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t2z ProSAT]</span></td></tr>
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</table>
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{{STRUCTURE_1t2z| PDB=1t2z | SCENE= }}
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The receptor complex resulting from association of MD-2 and the ectodomain of Toll-like receptor 4 (TLR4) mediates lipopolysaccharide (LPS) signal transduction across the cell membrane. We prepared a tertiary structure model of MD-2, based on the known structures of homologous lipid-binding proteins. Analysis of circular dichroic spectra of purified bacterially expressed MD-2 indicates high content of beta-type secondary structure, in agreement with the structural model. Bacterially expressed MD-2 was able to confer LPS responsiveness to cells expressing TLR4 despite lacking glycosylation. We identified several clusters of basic residues on the surface of MD-2. Mutation of each of two clusters encompassing the residues Lys(89)-Arg(90)-Lys(91) and Lys(125)-Lys(125) significantly decreased the signal transduction of the respective MD-2 mutants either upon co-expression with TLR4 or upon addition as soluble protein into the supernatant of cells overexpressing TLR4. These basic clusters lie at the edge of the beta-sheet sandwich, which in cholesterol-binding protein connected to Niemann-Pick disease C2 (NPC2), dust mite allergen Der p2, and ganglioside GM2-activator protein form a hydrophobic pocket. In contrast, mutation of another basic cluster composed of Arg(69)-Lys(72), which according to the model lies further apart from the hydrophobic pocket only weakly decreased MD-2 activity. Furthermore, addition of the peptide, comprising the surface loop between Cys(95) and Cys(105), predicted by model, particularly in oxidized form, decreased LPS-induced production of tumor necrosis factor alpha and interleukin-8 upon application to monocytic cells and fibroblasts, respectively, supporting its involvement in LPS signaling. Our structural model of MD-2 is corroborated by biochemical analysis and contributes to the unraveling of molecular interactions in LPS recognition.
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===HUMAN MD-2 MODEL===
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Structural model of MD-2 and functional role of its basic amino acid clusters involved in cellular lipopolysaccharide recognition.,Gruber A, Mancek M, Wagner H, Kirschning CJ, Jerala R J Biol Chem. 2004 Jul 2;279(27):28475-82. Epub 2004 Apr 24. PMID:15111623<ref>PMID:15111623</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_15111623}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1t2z" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 15111623 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15111623}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Theoretical Model]]
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T2Z OCA].
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[[Category: Large Structures]]
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==Reference==
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<ref group="xtra">PMID:15111623</ref><references group="xtra"/>
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[[Category: Gruber, A]]
[[Category: Gruber, A]]
[[Category: Jerala, R]]
[[Category: Jerala, R]]
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[[Category: Mancek, M]]
[[Category: Mancek, M]]
[[Category: Wagner, H]]
[[Category: Wagner, H]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 08:58:55 2010''
 

Current revision

Theoretical Model: The protein structure described on this page was determined theoretically, and hence should be interpreted with caution.

HUMAN MD-2 MODEL

PDB ID 1t2z

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