3kyf

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{{Seed}}
 
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[[Image:3kyf.jpg|left|200px]]
 
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==Crystal structure of P4397 complexed with c-di-GMP==
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The line below this paragraph, containing "STRUCTURE_3kyf", creates the "Structure Box" on the page.
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<StructureSection load='3kyf' size='340' side='right'caption='[[3kyf]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3kyf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KYF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KYF FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene></td></tr>
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{{STRUCTURE_3kyf| PDB=3kyf | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kyf OCA], [https://pdbe.org/3kyf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kyf RCSB], [https://www.ebi.ac.uk/pdbsum/3kyf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kyf ProSAT]</span></td></tr>
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</table>
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===Crystal structure of P4397 complexed with c-di-GMP===
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== Function ==
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[https://www.uniprot.org/uniprot/YCGR_PSEPK YCGR_PSEPK] Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Increasing levels of c-di-GMP lead to decreased motility (By similarity). Binds c-di-GMP with a dissociation constant of 165 nM. Binds 2 intercalated (c-di-GMP) dimers per subunit.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_20226196}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 20226196 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ky/3kyf_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_20226196}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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3KYF is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KYF OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kyf ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:20226196</ref><references group="xtra"/>
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</StructureSection>
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[[Category: Pseudomonas putida]]
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[[Category: Large Structures]]
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[[Category: Choi, B S.]]
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[[Category: Pseudomonas putida KT2440]]
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[[Category: Kim, H.]]
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[[Category: Choi BS]]
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[[Category: Ko, J.]]
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[[Category: Kim H]]
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[[Category: Ryu, K S.]]
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[[Category: Ko J]]
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[[Category: C-di-gmp]]
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[[Category: Ryu KS]]
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[[Category: Pilz domain]]
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[[Category: Pp4397]]
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[[Category: Unknown function]]
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[[Category: Vca0042]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 14 09:35:08 2010''
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Current revision

Crystal structure of P4397 complexed with c-di-GMP

PDB ID 3kyf

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