1ohz

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[[Image:1ohz.gif|left|200px]]<br /><applet load="1ohz" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1ohz, resolution 2.2&Aring;" />
 
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'''COHESIN-DOCKERIN COMPLEX FROM THE CELLULOSOME OF CLOSTRIDIUM THERMOCELLUM'''<br />
 
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==Overview==
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==Cohesin-Dockerin complex from the cellulosome of Clostridium thermocellum==
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The utilization of organized supramolecular assemblies to exploit the, synergistic interactions afforded by close proximity, both for enzymatic, synthesis and for the degradation of recalcitrant substrates, is an, emerging theme in cellular biology. Anaerobic bacteria harness a, multiprotein complex, termed the "cellulosome," for efficient degradation, of the plant cell wall. This megadalton catalytic machine organizes an, enzymatic consortium on a multifaceted molecular scaffold whose "cohesin", domains interact with corresponding "dockerin" domains of the enzymes., Here we report the structure of the cohesin-dockerin complex from, Clostridium thermocellum at 2.2-A resolution. The data show that the, beta-sheet cohesin domain interacts predominantly with one of the helices, of the dockerin. Whereas the structure of the cohesin remains essentially, unchanged, the loop-helix-helix-loop-helix motif of the dockerin undergoes, conformational change and ordering compared with its solution structure, although the classical 12-residue EF-hand coordination to two calcium ions, is maintained. Significantly, internal sequence duplication within the, dockerin is manifested in near-perfect internal twofold symmetry, suggesting that both "halves" of the dockerin may interact with cohesins, in a similar manner, thus providing a higher level of structure to the, cellulosome and possibly explaining the presence of "polycellulosomes.", The structure provides an explanation for the lack of cross-species, recognition between cohesin-dockerin pairs and thus provides a blueprint, for the rational design, construction, and exploitation of these catalytic, assemblies.
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<StructureSection load='1ohz' size='340' side='right'caption='[[1ohz]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1ohz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OHZ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ohz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ohz OCA], [https://pdbe.org/1ohz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ohz RCSB], [https://www.ebi.ac.uk/pdbsum/1ohz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ohz ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CIPA_ACET2 CIPA_ACET2] Acts as a scaffolding protein in the cellulosome. It promotes binding of cellulose to the catalytic domains of the cellulolytic enzymes.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oh/1ohz_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ohz ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The utilization of organized supramolecular assemblies to exploit the synergistic interactions afforded by close proximity, both for enzymatic synthesis and for the degradation of recalcitrant substrates, is an emerging theme in cellular biology. Anaerobic bacteria harness a multiprotein complex, termed the "cellulosome," for efficient degradation of the plant cell wall. This megadalton catalytic machine organizes an enzymatic consortium on a multifaceted molecular scaffold whose "cohesin" domains interact with corresponding "dockerin" domains of the enzymes. Here we report the structure of the cohesin-dockerin complex from Clostridium thermocellum at 2.2-A resolution. The data show that the beta-sheet cohesin domain interacts predominantly with one of the helices of the dockerin. Whereas the structure of the cohesin remains essentially unchanged, the loop-helix-helix-loop-helix motif of the dockerin undergoes conformational change and ordering compared with its solution structure, although the classical 12-residue EF-hand coordination to two calcium ions is maintained. Significantly, internal sequence duplication within the dockerin is manifested in near-perfect internal twofold symmetry, suggesting that both "halves" of the dockerin may interact with cohesins in a similar manner, thus providing a higher level of structure to the cellulosome and possibly explaining the presence of "polycellulosomes." The structure provides an explanation for the lack of cross-species recognition between cohesin-dockerin pairs and thus provides a blueprint for the rational design, construction, and exploitation of these catalytic assemblies.
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==About this Structure==
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Cellulosome assembly revealed by the crystal structure of the cohesin-dockerin complex.,Carvalho AL, Dias FM, Prates JA, Nagy T, Gilbert HJ, Davies GJ, Ferreira LM, Romao MJ, Fontes CM Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):13809-14. Epub 2003 Nov 17. PMID:14623971<ref>PMID:14623971</ref>
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1OHZ is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum] with NO3, CA, CL and EDO as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] Known structural/functional Site: <scene name='pdbsite=AC1:Edo Binding Site For Chain A'>AC1</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1OHZ OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Cellulosome assembly revealed by the crystal structure of the cohesin-dockerin complex., Carvalho AL, Dias FM, Prates JA, Nagy T, Gilbert HJ, Davies GJ, Ferreira LM, Romao MJ, Fontes CM, Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):13809-14. Epub 2003 Nov 17. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=14623971 14623971]
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</div>
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[[Category: Clostridium thermocellum]]
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<div class="pdbe-citations 1ohz" style="background-color:#fffaf0;"></div>
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[[Category: Endo-1,4-beta-xylanase]]
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[[Category: Protein complex]]
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[[Category: Carvalho, A.L.]]
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[[Category: Davies, G.J.]]
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[[Category: Dias, F.M.V.]]
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[[Category: Ferreira, L.M.A.]]
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[[Category: Fontes, C.M.G.A.]]
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[[Category: Gilbert, H.J.]]
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[[Category: Prates, J.A.M.]]
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[[Category: Romao, M.J.]]
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[[Category: CA]]
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[[Category: CL]]
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[[Category: EDO]]
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[[Category: NO3]]
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[[Category: cellulose degradation]]
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[[Category: cellulosome]]
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[[Category: clostridium thermocellum]]
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[[Category: cohesin]]
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[[Category: dockerin]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 17:44:33 2007''
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==See Also==
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*[[Cellulosome scaffolding protein 3D structures|Cellulosome scaffolding protein 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Acetivibrio thermocellus]]
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[[Category: Large Structures]]
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[[Category: Carvalho AL]]
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[[Category: Davies GJ]]
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[[Category: Dias FMV]]
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[[Category: Ferreira LMA]]
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[[Category: Fontes CMGA]]
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[[Category: Gilbert HJ]]
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[[Category: Prates JAM]]
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[[Category: Romao MJ]]

Current revision

Cohesin-Dockerin complex from the cellulosome of Clostridium thermocellum

PDB ID 1ohz

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