3kvv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:18, 21 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3kvv.jpg|left|200px]]
 
-
<!--
+
==Trapping of an oxocarbenium ion intermediate in UP crystals==
-
The line below this paragraph, containing "STRUCTURE_3kvv", creates the "Structure Box" on the page.
+
<StructureSection load='3kvv' size='340' side='right'caption='[[3kvv]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3kvv]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KVV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KVV FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=R2B:1,4-ANHYDRO-D-ERYTHRO-PENT-1-ENITOL'>R2B</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=URF:5-FLUOROURACIL'>URF</scene></td></tr>
-
{{STRUCTURE_3kvv| PDB=3kvv | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kvv OCA], [https://pdbe.org/3kvv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kvv RCSB], [https://www.ebi.ac.uk/pdbsum/3kvv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kvv ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/UDP_ECOLI UDP_ECOLI] Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kv/3kvv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kvv ConSurf].
 +
<div style="clear:both"></div>
-
===Trapping of an oxocarbenium ion intermediate in UP crystals===
+
==See Also==
-
 
+
*[[Uridine phosphorylase 3D structures|Uridine phosphorylase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_20364833}}, adds the Publication Abstract to the page
+
[[Category: Escherichia coli K-12]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 20364833 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Begley TP]]
-
{{ABSTRACT_PUBMED_20364833}}
+
[[Category: Bu W]]
-
 
+
[[Category: Ealick SE]]
-
==About this Structure==
+
[[Category: O'Leary S]]
-
3KVV is a 6 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KVV OCA].
+
[[Category: Paul D]]
-
 
+
[[Category: Rajashankar K]]
-
==Reference==
+
[[Category: Sanders J]]
-
<ref group="xtra">PMID:20364833</ref><references group="xtra"/>
+
[[Category: Settembre E]]
-
[[Category: Escherichia coli]]
+
[[Category: Toms A]]
-
[[Category: Uridine phosphorylase]]
+
-
[[Category: Begley, T P.]]
+
-
[[Category: Bu, W.]]
+
-
[[Category: Ealick, S E.]]
+
-
[[Category: Leary, S O.]]
+
-
[[Category: Paul, D.]]
+
-
[[Category: Rajashankar, K.]]
+
-
[[Category: Sanders, J.]]
+
-
[[Category: Settembre, E.]]
+
-
[[Category: Toms, A.]]
+
-
[[Category: Cytoplasm]]
+
-
[[Category: Glycal]]
+
-
[[Category: Glycosyltransferase]]
+
-
[[Category: Oxocarbenium ion]]
+
-
[[Category: Pyrimidine salvage]]
+
-
[[Category: Transferase]]
+
-
[[Category: Uridine phosphorylase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 28 10:51:05 2010''
+

Current revision

Trapping of an oxocarbenium ion intermediate in UP crystals

PDB ID 3kvv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3kvv"
Personal tools