3fxq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:25, 20 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3fxq.png|left|200px]]
 
-
<!--
+
==Crystal structure of the LysR-type transcriptional regulator TsaR==
-
The line below this paragraph, containing "STRUCTURE_3fxq", creates the "Structure Box" on the page.
+
<StructureSection load='3fxq' size='340' side='right'caption='[[3fxq]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3fxq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Comamonas_testosteroni Comamonas testosteroni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FXQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FXQ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
{{STRUCTURE_3fxq| PDB=3fxq | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fxq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fxq OCA], [https://pdbe.org/3fxq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fxq RCSB], [https://www.ebi.ac.uk/pdbsum/3fxq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fxq ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the LysR-type transcriptional regulator TsaR===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/TSAR_COMTE TSAR_COMTE] Regulates expression of the tsaMBCD1 operon and of tsaT in response to p-toluenesulfonate (TSA). Acts by binding directly to the promoter region. Binding to the tsa promoter depends on TSA concentration.<ref>PMID:12676713</ref> <ref>PMID:13680097</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_20059681}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20059681 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fx/3fxq_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_20059681}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
3FXQ is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Comamonas_testosteroni Comamonas testosteroni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FXQ OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fxq ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
<ref group="xtra">PMID:20059681</ref><ref group="xtra">PMID:18678953</ref><references group="xtra"/>
+
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Comamonas testosteroni]]
[[Category: Comamonas testosteroni]]
-
[[Category: Kertesz, M A.]]
+
[[Category: Large Structures]]
-
[[Category: Kikhney, A.]]
+
[[Category: Kertesz MA]]
-
[[Category: Monferrer, D.]]
+
[[Category: Kikhney A]]
-
[[Category: Svergun, D.]]
+
[[Category: Monferrer D]]
-
[[Category: Tralau, T.]]
+
[[Category: Svergun D]]
-
[[Category: Uson, I.]]
+
[[Category: Tralau T]]
-
[[Category: Dna-binding]]
+
[[Category: Uson I]]
-
[[Category: Lttr]]
+
-
[[Category: Lysr-type]]
+
-
[[Category: Plasmid]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+
-
[[Category: Transcription regulator]]
+
-
[[Category: Transcriptional regulator]]
+
-
[[Category: Tsar]]
+
-
[[Category: Whth]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 28 10:56:39 2010''
+

Current revision

Crystal structure of the LysR-type transcriptional regulator TsaR

PDB ID 3fxq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3fxq"
Personal tools