3itj

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{{Seed}}
 
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[[Image:3itj.png|left|200px]]
 
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==Crystal structure of Saccharomyces cerevisiae thioredoxin reductase 1 (Trr1)==
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The line below this paragraph, containing "STRUCTURE_3itj", creates the "Structure Box" on the page.
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<StructureSection load='3itj' size='340' side='right'caption='[[3itj]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3itj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_W303 Saccharomyces cerevisiae W303]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ITJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ITJ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
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{{STRUCTURE_3itj| PDB=3itj | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3itj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3itj OCA], [https://pdbe.org/3itj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3itj RCSB], [https://www.ebi.ac.uk/pdbsum/3itj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3itj ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TRXB1_YEAST TRXB1_YEAST] Acts on thioredoxins 1 and 2.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/it/3itj_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3itj ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The enzymatic activity of thioredoxin reductase enzymes is endowed by at least two redox centers: a flavin and a dithiol/disulfide CXXC motif. The interaction between thioredoxin reductase and thioredoxin is generally species-specific, but the molecular aspects related to this phenomenon remain elusive. Here, we investigated the yeast cytosolic thioredoxin system, which is composed of NADPH, thioredoxin reductase (ScTrxR1), and thioredoxin 1 (ScTrx1) or thioredoxin 2 (ScTrx2). We showed that ScTrxR1 was able to efficiently reduce yeast thioredoxins (mitochondrial and cytosolic) but failed to reduce the human and Escherichia coli thioredoxin counterparts. To gain insights into this specificity, the crystallographic structure of oxidized ScTrxR1 was solved at 2.4 A resolution. The protein topology of the redox centers indicated the necessity of a large structural rearrangement for FAD and thioredoxin reduction using NADPH. Therefore, we modeled a large structural rotation between the two ScTrxR1 domains (based on the previously described crystal structure, PDB code 1F6M ). Employing diverse approaches including enzymatic assays, site-directed mutagenesis, amino acid sequence alignment, and structure comparisons, insights were obtained about the features involved in the species-specificity phenomenon, such as complementary electronic parameters between the surfaces of ScTrxR1 and yeast thioredoxin enzymes and loops and residues (such as Ser(72) in ScTrx2). Finally, structural comparisons and amino acid alignments led us to propose a new classification that includes a larger number of enzymes with thioredoxin reductase activity, neglected in the low/high molecular weight classification.
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===Crystal structure of Saccharomyces cerevisiae thioredoxin reductase 1 (Trr1)===
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Insights into the Specificity of Thioredoxin Reductase-Thioredoxin Interactions. A Structural and Functional Investigation of the Yeast Thioredoxin System.,Oliveira MA, Discola KF, Alves SV, Medrano FJ, Guimaraes BG, Netto LE Biochemistry. 2010 Mar 26. PMID:20235561<ref>PMID:20235561</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3itj" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20235561}}, adds the Publication Abstract to the page
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*[[Thioredoxin reductase 3D structures|Thioredoxin reductase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20235561 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20235561}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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3ITJ is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_w303 Saccharomyces cerevisiae w303]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ITJ OCA].
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[[Category: Saccharomyces cerevisiae W303]]
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[[Category: Alves SV]]
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==Reference==
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[[Category: Discola KF]]
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<ref group="xtra">PMID:20235561</ref><references group="xtra"/>
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[[Category: Guimaraes BG]]
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[[Category: Saccharomyces cerevisiae w303]]
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[[Category: Medrano FJ]]
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[[Category: Thioredoxin-disulfide reductase]]
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[[Category: Netto LES]]
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[[Category: Alves, S V.]]
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[[Category: Oliveira MA]]
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[[Category: Discola, K F.]]
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[[Category: Guimaraes, B G.]]
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[[Category: Medrano, F J.]]
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[[Category: Netto, L E.S.]]
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[[Category: Oliveira, M A.]]
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[[Category: Cytoplasm]]
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[[Category: Disulfide bond]]
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[[Category: Fad]]
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[[Category: Flavoprotein]]
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[[Category: Nadp]]
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[[Category: Oxidoreductase]]
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[[Category: Phosphoprotein]]
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[[Category: Redox-active center]]
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[[Category: Thioredoxin reductase 1 alpha/beta type protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 28 11:20:16 2010''
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Current revision

Crystal structure of Saccharomyces cerevisiae thioredoxin reductase 1 (Trr1)

PDB ID 3itj

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