2wff

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{{Seed}}
 
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[[Image:2wff.jpg|left|200px]]
 
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==Equine Rhinitis A Virus==
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The line below this paragraph, containing "STRUCTURE_2wff", creates the "Structure Box" on the page.
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<StructureSection load='2wff' size='340' side='right'caption='[[2wff]], [[Resolution|resolution]] 4.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2wff]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Equine_rhinitis_A_virus Equine rhinitis A virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WFF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WFF FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wff FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wff OCA], [https://pdbe.org/2wff PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wff RCSB], [https://www.ebi.ac.uk/pdbsum/2wff PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wff ProSAT]</span></td></tr>
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{{STRUCTURE_2wff| PDB=2wff | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/B9VV85_9PICO B9VV85_9PICO]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wf/2wff_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wff ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Equine rhinitis A virus (ERAV) is closely related to foot-and-mouth disease virus (FMDV), belonging to the genus Aphthovirus of the Picornaviridae. How picornaviruses introduce their RNA genome into the cytoplasm of the host cell to initiate replication is unclear since they have no lipid envelope to facilitate fusion with cellular membranes. It has been thought that the dissociation of the FMDV particle into pentameric subunits at acidic pH is the mechanism for genome release during cell entry, but this raises the problem of how transfer across the endosome membrane of the genome might be facilitated. In contrast, most other picornaviruses form 'altered' particle intermediates (not reported for aphthoviruses) thought to induce membrane pores through which the genome can be transferred. Here we show that ERAV, like FMDV, dissociates into pentamers at mildly acidic pH but demonstrate that dissociation is preceded by the transient formation of empty 80S particles which have released their genome and may represent novel biologically relevant intermediates in the aphthovirus cell entry process. The crystal structures of the native ERAV virus and a low pH form have been determined via highly efficient crystallization and data collection strategies, required due to low virus yields. ERAV is closely similar to FMDV for VP2, VP3 and part of VP4 but VP1 diverges, to give a particle with a pitted surface, as seen in cardioviruses. The low pH particle has internal structure consistent with it representing a pre-dissociation cell entry intermediate. These results suggest a unified mechanism of picornavirus cell entry.
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===EQUINE RHINITIS A VIRUS===
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Equine rhinitis A virus and its low pH empty particle: clues towards an aphthovirus entry mechanism?,Tuthill TJ, Harlos K, Walter TS, Knowles NJ, Groppelli E, Rowlands DJ, Stuart DI, Fry EE PLoS Pathog. 2009 Oct;5(10):e1000620. Epub 2009 Oct 9. PMID:19816570<ref>PMID:19816570</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19816570}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2wff" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19816570 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19816570}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Equine rhinitis A virus]]
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2WFF is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WFF OCA].
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[[Category: Large Structures]]
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[[Category: Fry EE]]
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==Reference==
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[[Category: Gropelli E]]
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<ref group="xtra">PMID:19816570</ref><references group="xtra"/>
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[[Category: Harlos K]]
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[[Category: Equine rhinitis a virus]]
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[[Category: Knowles NJ]]
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[[Category: Fry, E E.]]
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[[Category: Rowlands DJ]]
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[[Category: Gropelli, E.]]
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[[Category: Stuart DI]]
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[[Category: Harlos, K.]]
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[[Category: Tuthill TJ]]
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[[Category: Knowles, N J.]]
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[[Category: Walter TS]]
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[[Category: Rowlands, D J.]]
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[[Category: Stuart, D I.]]
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[[Category: Tuthill, T J.]]
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[[Category: Walter, T S.]]
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[[Category: Capsid]]
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[[Category: Picornavirus]]
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[[Category: Virus]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 5 11:55:26 2010''
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Current revision

Equine Rhinitis A Virus

PDB ID 2wff

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