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3e4b

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{{Seed}}
 
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[[Image:3e4b.png|left|200px]]
 
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==Crystal structure of AlgK from Pseudomonas fluorescens WCS374r==
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The line below this paragraph, containing "STRUCTURE_3e4b", creates the "Structure Box" on the page.
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<StructureSection load='3e4b' size='340' side='right'caption='[[3e4b]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3e4b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_fluorescens_liquefaciens"_flugge_1886 "bacillus fluorescens liquefaciens" flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E4B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E4B FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">algK ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886])</td></tr>
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{{STRUCTURE_3e4b| PDB=3e4b | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e4b OCA], [https://pdbe.org/3e4b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e4b RCSB], [https://www.ebi.ac.uk/pdbsum/3e4b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e4b ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e4/3e4b_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e4b ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The opportunistic pathogen Pseudomonas aeruginosa causes chronic biofilm infections in cystic fibrosis patients. During colonization of the lung, P. aeruginosa converts to a mucoid phenotype characterized by overproduction of the exopolysaccharide alginate. Here we show that AlgK, a protein essential for production of high molecular weight alginate, is an outer membrane lipoprotein that contributes to the correct localization of the porin AlgE. Our 2.5 A structure shows AlgK is composed of 9.5 tetratricopeptide-like repeats, and three putative sites of protein-protein interaction have been identified. Bioinformatics analysis suggests that BcsA, PgaA, and PelB, involved in the production and export of cellulose, poly-beta-1,6-N-Acetyl-D-glucosamine, and Pel exopolysaccharide, respectively, share the same topology as AlgK/E. Together, our data suggest that AlgK plays a role in the assembly of the alginate biosynthetic complex and represents the periplasmic component of a new type of outer membrane secretin that differs from canonical bacterial capsular polysaccharide secretion systems.
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===Crystal structure of AlgK from Pseudomonas fluorescens WCS374r===
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AlgK is a TPR-containing protein and the periplasmic component of a novel exopolysaccharide secretin.,Keiski CL, Harwich M, Jain S, Neculai AM, Yip P, Robinson H, Whitney JC, Riley L, Burrows LL, Ohman DE, Howell PL Structure. 2010 Feb 10;18(2):265-73. PMID:20159471<ref>PMID:20159471</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<!--
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_20159471}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3e4b" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 20159471 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20159471}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Bacillus fluorescens liquefaciens flugge 1886]]
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3E4B is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E4B OCA].
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[[Category: Large Structures]]
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[[Category: Burrows, L L]]
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==Reference==
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[[Category: Harwich, M]]
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<ref group="xtra">PMID:20159471</ref><references group="xtra"/>
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[[Category: Howell, P L]]
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[[Category: Pseudomonas fluorescens]]
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[[Category: Jain, S]]
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[[Category: Burrows, L L.]]
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[[Category: Keiski, C L]]
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[[Category: Harwich, M.]]
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[[Category: Neculai, A M]]
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[[Category: Howell, P L.]]
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[[Category: Ohman, D E]]
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[[Category: Jain, S.]]
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[[Category: Robinson, H]]
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[[Category: Keiski, C L.]]
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[[Category: Whitney, J C]]
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[[Category: Neculai, A M.]]
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[[Category: Yip, P]]
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[[Category: Ohman, D E.]]
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[[Category: Robinson, H.]]
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[[Category: Whitney, J C.]]
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[[Category: Yip, P.]]
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[[Category: Alginate biosynthesis]]
[[Category: Alginate biosynthesis]]
[[Category: Algk]]
[[Category: Algk]]
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[[Category: Superhelix]]
[[Category: Superhelix]]
[[Category: Tetratricopeptide repeat]]
[[Category: Tetratricopeptide repeat]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 12 10:33:13 2010''
 

Current revision

Crystal structure of AlgK from Pseudomonas fluorescens WCS374r

PDB ID 3e4b

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