3koy

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{{Seed}}
 
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[[Image:3koy.png|left|200px]]
 
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==Crystal Structure of ornithine 4,5 aminomutase in complex with ornithine (Aerobic)==
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The line below this paragraph, containing "STRUCTURE_3koy", creates the "Structure Box" on the page.
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<StructureSection load='3koy' size='340' side='right'caption='[[3koy]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3koy]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetoanaerobium_sticklandii Acetoanaerobium sticklandii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KOY FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5AD:5-DEOXYADENOSINE'>5AD</scene>, <scene name='pdbligand=B12:COBALAMIN'>B12</scene>, <scene name='pdbligand=Z97:(E)-N~5~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE)-L-ORNITHINE'>Z97</scene></td></tr>
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{{STRUCTURE_3koy| PDB=3koy | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3koy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3koy OCA], [https://pdbe.org/3koy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3koy RCSB], [https://www.ebi.ac.uk/pdbsum/3koy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3koy ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/OAME_ACESD OAME_ACESD] Component of a complex that catalyzes the reversible migration of the omega amino group of D-ornithine to C-4 to form (2R,4S)-2,4-diaminopentanoic acid. OraE may be the catalytic subunit. Active only on D-ornithine and 2,4-diaminopentanoic acid but not active on L-ornithine, L-beta-lysine, L-alpha-lysine or D-alpha-lysine.<ref>PMID:11577113</ref> <ref>PMID:4711468</ref> <ref>PMID:4711468</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/3koy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3koy ConSurf].
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<div style="clear:both"></div>
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===Crystal Structure of ornithine 4,5 aminomutase in complex with ornithine (Aerobic)===
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==See Also==
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*[[Aminomutase 3D structures|Aminomutase 3D structures]]
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_20106986}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 20106986 is the PubMed ID number.
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</StructureSection>
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[[Category: Acetoanaerobium sticklandii]]
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{{ABSTRACT_PUBMED_20106986}}
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[[Category: Large Structures]]
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[[Category: Levy CW]]
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==About this Structure==
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[[Category: Leys D]]
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3KOY is a 8 chains structure with sequences from [http://en.wikipedia.org/wiki/Clostridium_sticklandii Clostridium sticklandii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOY OCA].
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[[Category: Scrutton NS]]
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[[Category: Wolthers KR]]
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==Reference==
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<ref group="xtra">PMID:20106986</ref><references group="xtra"/>
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[[Category: Clostridium sticklandii]]
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[[Category: Levy, C W.]]
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[[Category: Leys, D.]]
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[[Category: Scrutton, N S.]]
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[[Category: Wolthers, K R.]]
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[[Category: Aerobic]]
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[[Category: D-ornithine 4]]
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[[Category: Metal binding protein]]
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[[Category: Ornithine complex]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 12 10:33:40 2010''
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Current revision

Crystal Structure of ornithine 4,5 aminomutase in complex with ornithine (Aerobic)

PDB ID 3koy

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