3mw6

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(New page: '''Unreleased structure''' The entry 3mw6 is ON HOLD Authors: Tan, K., Zhou, M., Duggan, E., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG) Description: Th...)
Current revision (13:30, 16 January 2019) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 3mw6 is ON HOLD
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==Crystal structure of NMB1681 from Neisseria meningitidis MC58, a FinO-like RNA chaperone==
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<StructureSection load='3mw6' size='340' side='right' caption='[[3mw6]], [[Resolution|resolution]] 2.21&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3mw6]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Neimb Neimb]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2hxj 2hxj]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MW6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MW6 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2hxj|2hxj]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NMB1681 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122586 NEIMB])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mw6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mw6 OCA], [http://pdbe.org/3mw6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mw6 RCSB], [http://www.ebi.ac.uk/pdbsum/3mw6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mw6 ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mw/3mw6_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mw6 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The conjugative transfer of F-like plasmids between bacteria is regulated by the plasmid-encoded RNA chaperone, FinO, which facilitates sense - antisense RNA interactions to regulate plasmid gene expression. FinO was thought to adopt a unique structure, however many putative homologs have been identified in microbial genomes and are considered members of the FinO_conjugation_repressor superfamily. We were interested in determining whether other members were also able to bind RNA and promote duplex formation, suggesting that this motif does indeed identify a putative RNA chaperone. We determined the crystal structure of the N. meningitidis MC58 protein NMB1681. It revealed striking similarity to FinO, with a conserved fold and a large, positively charged surface that could function in RNA interactions. Using assays developed to study FinO-FinP sRNA interactions, NMB1681, like FinO, bound tightly to FinP RNA stem-loops with short 5' and 3' single-stranded tails but not to ssRNA. It also was able to catalyze strand exchange between an RNA duplex and a complementary single-strand, and facilitated duplexing between complementary RNA hairpins. Finally, NMB1681 was able to rescue a finO deficiency and repress F plasmid conjugation. This study strongly suggests that NMB1681 is a FinO-like RNA chaperone that likely regulates gene expression through RNA-based mechanisms in N. meningitidis.
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Authors: Tan, K., Zhou, M., Duggan, E., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
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N. meningitidis 1681 is a member of the FinO family of RNA chaperones.,Chaulk S, Lu J, Tan K, Arthur DC, Edwards RA, Frost LS, Joachimiak A, Glover JN RNA Biol. 2010 Nov 1;7(6):112-119. PMID:21045552<ref>PMID:21045552</ref>
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Description: The crystal structure of the protein NMB1681 from Neisseria meningitidis MC58
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 12 10:48:07 2010''
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<div class="pdbe-citations 3mw6" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Neimb]]
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[[Category: Abdullah, J]]
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[[Category: Duggan, E]]
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[[Category: Joachimiak, A]]
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[[Category: Structural genomic]]
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[[Category: Tan, K]]
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[[Category: Zhou, M]]
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[[Category: Mcsg]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Unknown function]]

Current revision

Crystal structure of NMB1681 from Neisseria meningitidis MC58, a FinO-like RNA chaperone

3mw6, resolution 2.21Å

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