This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ldk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:30, 20 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3ldk.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of A. japonicus CB05==
-
The line below this paragraph, containing "STRUCTURE_3ldk", creates the "Structure Box" on the page.
+
<StructureSection load='3ldk' size='340' side='right'caption='[[3ldk]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ldk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_japonicus Aspergillus japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LDK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene></td></tr>
-
{{STRUCTURE_3ldk| PDB=3ldk | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ldk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ldk OCA], [https://pdbe.org/3ldk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ldk RCSB], [https://www.ebi.ac.uk/pdbsum/3ldk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ldk ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of A. japonicus CB05===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q1W3Z7_ASPJA Q1W3Z7_ASPJA]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3LDK is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspergillus_japonicus Aspergillus japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LDK OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ld/3ldk_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ldk ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Aspergillus japonicus]]
[[Category: Aspergillus japonicus]]
-
[[Category: Chaing, C M.]]
+
[[Category: Large Structures]]
-
[[Category: Chen, C D.]]
+
[[Category: Chaing CM]]
-
[[Category: Chen, C J.]]
+
[[Category: Chen CD]]
-
[[Category: Chuankhayan, P.]]
+
[[Category: Chen CJ]]
-
[[Category: Hsieh, C Y.]]
+
[[Category: Chuankhayan P]]
-
[[Category: Hsieh, Y C.]]
+
[[Category: Hsieh CY]]
-
[[Category: Five-bladed beta-propeller fold]]
+
[[Category: Hsieh YC]]
-
[[Category: Hydrolase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 12 11:18:21 2010''
+

Current revision

Crystal Structure of A. japonicus CB05

PDB ID 3ldk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools