Alignment of 1rpu vs 1r9f
From Proteopedia
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| - | < | + | [[1rpu]] = Carnation italian ringspot virus p19<br> |
| - | + | [[1r9f]] = Tomato bushy stunt virus p19 | |
| - | Length=121 | + | |
| + | Sequences in structures obtained from PDBsum and aligned.<br> | ||
| + | Alignment from: [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&BLAST_SPEC=blast2seq&LINK_LOC=blasttab&LAST_PAGE=blastn&BLAST_INIT=blast2seq&QUERY=%3E1rpu%3AA%0ANDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV&SUBJECTS=%3E1r9f%3AA%0AHMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA protein-protein BLAST]<br> | ||
| + | Length=121<br> | ||
| + | Score = 226 bits (576) | ||
| + | Expect = 1e-64 | ||
| + | Method: Compositional matrix adjust.<br> | ||
| + | Identities = 106/119 (89%) | ||
| + | Positives = 114/119 (95%) | ||
| + | Gaps = 3/119 (2%) | ||
| - | Score = 226 bits (576), Expect = 1e-64, Method: Compositional matrix adjust. | ||
| - | Identities = 106/119 (89%), Positives = 114/119 (95%), Gaps = 3/119 (2%) | ||
| - | </nowiki> | ||
<small><b><font face = 'courier'> | <small><b><font face = 'courier'> | ||
1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75<br> | 1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75<br> | ||
| - | +TSPFKLPDESPSWTEWRL+NDE | + | +TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG<br> |
1r9f 2 MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61<br> | 1r9f 2 MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61<br> | ||
1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134<br> | 1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134<br> | ||
SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+<br> | SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+<br> | ||
| - | + | 1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120<br> | |
</font></b></small><br> | </font></b></small><br> | ||
Current revision
1rpu = Carnation italian ringspot virus p19
1r9f = Tomato bushy stunt virus p19
Sequences in structures obtained from PDBsum and aligned.
Alignment from: protein-protein BLAST
Length=121
Score = 226 bits (576)
Expect = 1e-64
Method: Compositional matrix adjust.
Identities = 106/119 (89%)
Positives = 114/119 (95%)
Gaps = 3/119 (2%)
1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75
+TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG
1r9f 2 MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61
1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134
SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+
1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120
