3lgd

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{{Seed}}
 
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[[Image:3lgd.png|left|200px]]
 
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==Crystal structure of human adenosine deaminase growth factor, adenosine deaminase type 2 (ADA2)==
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The line below this paragraph, containing "STRUCTURE_3lgd", creates the "Structure Box" on the page.
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<StructureSection load='3lgd' size='340' side='right'caption='[[3lgd]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3lgd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LGD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LGD FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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{{STRUCTURE_3lgd| PDB=3lgd | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lgd OCA], [https://pdbe.org/3lgd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lgd RCSB], [https://www.ebi.ac.uk/pdbsum/3lgd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lgd ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ADA2_HUMAN ADA2_HUMAN] Component of the ATAC complex, a complex with histone acetyltransferase activity on histones H3 and H4. Required for the function of some acidic activation domains, which activate transcription from a distant site (By similarity). Binds double-stranded DNA. Binds dinucleosomes, probably at the linker region between neighboring nucleosomes. Plays a role in chromatin remodeling.<ref>PMID:19103755</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lg/3lgd_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lgd ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Two distinct adenosine deaminases, ADA1 and ADA2, are found in humans. ADA1 has an important role in lymphocyte function and inherited mutations in ADA1 result in severe combined immunodeficiency. The recently isolated ADA2 belongs to the novel family of adenosine deaminase growth factors (ADGFs), which play an important role in tissue development. The crystal structures of ADA2 and ADA2 bound to a transition state analogue presented here reveal the structural basis of the catalytic/signaling activity of ADGF/ADA2 proteins. In addition to the catalytic domain, the structures discovered two ADGF/ADA2-specific domains of novel folds that mediate the protein dimerization and binding to the cell surface receptors. This complex architecture is in sharp contrast with that of monomeric single domain ADA1. An extensive glycosylation and the presence of a conserved disulfide bond and a signal peptide in ADA2 strongly suggest that ADA2, in contrast to ADA1, is specifically designed to act in the extracellular environment. The comparison of catalytic sites of ADA2 and ADA1 demonstrates large differences in the arrangement of the substrate-binding pockets. These structural differences explain the substrate and inhibitor specificity of adenosine deaminases and provide the basis for a rational design of ADA2-targeting drugs to modulate the immune system responses in pathophysiological conditions.
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===Crystal structure of human adenosine deaminase growth factor, adenosine deaminase type 2 (ADA2)===
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Structural basis for the growth factor activity of human adenosine deaminase ADA2.,Zavialov AV, Yu X, Spillmann D, Lauvau G, Zavialov AV J Biol Chem. 2010 Apr 16;285(16):12367-77. Epub 2010 Feb 9. PMID:20147294<ref>PMID:20147294</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3lgd" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20147294}}, adds the Publication Abstract to the page
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*[[Adenosine deaminase 3D structures|Adenosine deaminase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20147294 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20147294}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3LGD is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LGD OCA].
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==Reference==
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<ref group="xtra">PMID:20147294</ref><references group="xtra"/>
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[[Category: Adenosine deaminase]]
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Zavialov, A V.]]
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[[Category: Large Structures]]
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[[Category: Dimerization and receptor binding domain]]
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[[Category: Zavialov AV]]
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[[Category: Glycoprotein]]
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[[Category: Growth factor]]
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[[Category: Hydrolase]]
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[[Category: Secreted]]
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[[Category: Tim barrel]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu May 20 08:59:02 2010''
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Current revision

Crystal structure of human adenosine deaminase growth factor, adenosine deaminase type 2 (ADA2)

PDB ID 3lgd

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