2kkx

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{{Seed}}
 
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[[Image:2kkx.png|left|200px]]
 
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==Solution Structure of C-terminal domain of reduced NleG2-3 (residues 90-191) from Pathogenic E. coli O157:H7. Northeast Structural Genomics Consortium and Midwest Center for Structural Genomics target ET109A==
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The line below this paragraph, containing "STRUCTURE_2kkx", creates the "Structure Box" on the page.
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<StructureSection load='2kkx' size='340' side='right'caption='[[2kkx]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2kkx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O157:H7 Escherichia coli O157:H7]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KKX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KKX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kkx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kkx OCA], [https://pdbe.org/2kkx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kkx RCSB], [https://www.ebi.ac.uk/pdbsum/2kkx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kkx ProSAT], [https://www.topsan.org/Proteins/NESGC/2kkx TOPSAN]</span></td></tr>
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{{STRUCTURE_2kkx| PDB=2kkx | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8X509_ECO57 Q8X509_ECO57]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/2kkx_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kkx ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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NleG homologues constitute the largest family of Type 3 effectors delivered by pathogenic E. coli, with fourteen members in the enterohaemorrhagic (EHEC) O157:H7 strain alone. Identified recently as part of the non-LEE-encoded (Nle) effector set, this family remained uncharacterised and shared no sequence homology to other proteins including those of known function. The C-terminal domain of NleG2-3 (residues 90 to 191) is the most conserved region in NleG proteins and was solved by NMR. Structural analysis of this structure revealed the presence of a RING finger/U-box motif. Functional assays demonstrated that NleG2-3 as well as NleG5-1, NleG6-2 and NleG9' family members exhibited a strong autoubiquitination activity in vitro; a characteristic usually expressed by eukaryotic ubiquitin E3 ligases. When screened for activity against a panel of 30 human E2 enzymes, the NleG2-3 and NleG5-1 homologues showed an identical profile with only UBE2E2, UBE2E3 and UBE2D2 enzymes supporting NleG activity. Fluorescence polarization analysis yielded a binding affinity constant of 56+/-2 microM for the UBE2D2/NleG5-1 interaction, a value comparable with previous studies on E2/E3 affinities. The UBE2D2 interaction interface on NleG2-3 defined by NMR chemical shift perturbation and mutagenesis was shown to be generally similar to that characterised for human RING finger ubiquitin ligases. The alanine substitutions of UBE2D2 residues Arg5 and Lys63, critical for activation of eukaryotic E3 ligases, also significantly decreased both NleG binding and autoubiquitination activity. These results demonstrate that bacteria-encoded NleG effectors are E3 ubiquitin ligases analogous to RING finger and U-box enzymes in eukaryotes.
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===Solution Structure of C-terminal domain of reduced NleG2-3 (residues 90-191) from Pathogenic E. coli O157:H7. Northeast Structural Genomics Consortium and Midwest Center for Structural Genomics target ET109A===
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NleG Type 3 effectors from enterohaemorrhagic Escherichia coli are U-Box E3 ubiquitin ligases.,Wu B, Skarina T, Yee A, Jobin MC, Dileo R, Semesi A, Fares C, Lemak A, Coombes BK, Arrowsmith CH, Singer AU, Savchenko A PLoS Pathog. 2010 Jun 24;6(6):e1000960. PMID:20585566<ref>PMID:20585566</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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2KKX is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KKX OCA].
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<div class="pdbe-citations 2kkx" style="background-color:#fffaf0;"></div>
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[[Category: Escherichia coli]]
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== References ==
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[[Category: Arrowsmith, C H.]]
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<references/>
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[[Category: Claude, M.]]
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__TOC__
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[[Category: Edwards, A.]]
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</StructureSection>
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[[Category: Fares, C.]]
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[[Category: Escherichia coli O157:H7]]
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[[Category: Joachimiak, A.]]
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[[Category: Large Structures]]
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[[Category: Lemak, A.]]
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[[Category: Arrowsmith CH]]
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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[[Category: Claude M]]
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[[Category: Montelione, G T]]
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[[Category: Edwards A]]
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[[Category: NESG, Northeast Structural Genomics Consortium.]]
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[[Category: Fares C]]
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[[Category: OCSP, Ontario Centre for Structural Proteomics.]]
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[[Category: Joachimiak A]]
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[[Category: Savchenko, A.]]
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[[Category: Lemak A]]
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[[Category: Semest, A.]]
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[[Category: Montelione GT]]
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[[Category: Singer, A.]]
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[[Category: Savchenko A]]
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[[Category: Wu, B.]]
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[[Category: Semest A]]
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[[Category: Yee, A.]]
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[[Category: Singer A]]
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[[Category: Mcsg]]
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[[Category: Wu B]]
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[[Category: Methods development]]
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[[Category: Yee A]]
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[[Category: Midwest center for structural genomic]]
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[[Category: Nesg]]
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[[Category: Northeast structural genomics consortium]]
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[[Category: Ocsp]]
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[[Category: Ontario centre for structural proteomic]]
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[[Category: Protein structure initiative]]
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[[Category: Psi-2]]
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[[Category: Structural genomic]]
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[[Category: U-box domain]]
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[[Category: Unknown function]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu May 20 09:03:07 2010''
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Current revision

Solution Structure of C-terminal domain of reduced NleG2-3 (residues 90-191) from Pathogenic E. coli O157:H7. Northeast Structural Genomics Consortium and Midwest Center for Structural Genomics target ET109A

PDB ID 2kkx

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