3l4c

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{{Seed}}
 
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[[Image:3l4c.png|left|200px]]
 
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==Structural basis of membrane-targeting by Dock180==
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The line below this paragraph, containing "STRUCTURE_3l4c", creates the "Structure Box" on the page.
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<StructureSection load='3l4c' size='340' side='right'caption='[[3l4c]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3l4c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L4C FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.37&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene></td></tr>
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{{STRUCTURE_3l4c| PDB=3l4c | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l4c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l4c OCA], [https://pdbe.org/3l4c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l4c RCSB], [https://www.ebi.ac.uk/pdbsum/3l4c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l4c ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DOCK1_HUMAN DOCK1_HUMAN] Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Functions as a guanine nucleotide exchange factor (GEF), which activates Rac Rho small GTPases by exchanging bound GDP for free GTP. Its GEF activity may be enhanced by ELMO1.<ref>PMID:8657152</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l4/3l4c_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l4c ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The Dock180 family of atypical Rho family guanine nucleotide exchange factors (Rho-GEFs) regulate a variety of processes involving cellular or subcellular polarization, including cell migration and phagocytosis. Each contains a Dock homology region-1 (DHR-1) domain that is required to localize its GEF activity to a specific membrane compartment where levels of phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P(3)) are up-regulated by the local activity of PtdIns 3-kinase. Here we define the structural and energetic bases of phosphoinositide specificity by the DHR-1 domain of Dock1 (a GEF for Rac1), and show that DHR-1 utilizes a C2 domain scaffold and surface loops to create a basic pocket on its upper surface for recognition of the PtdIns(3,4,5)P(3) head group. The pocket has many of the characteristics of those observed in pleckstrin homology domains. We show that point mutations in the pocket that abolish phospholipid binding in vitro ablate the ability of Dock1 to induce cell polarization, and propose a model that brings together recent mechanistic and structural studies to rationalize the central role of DHR-1 in dynamic membrane targeting of the Rho-GEF activity of Dock180.
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===Structural basis of membrane-targeting by Dock180===
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Structural basis of membrane targeting by the Dock180 family of Rho family guanine exchange factors (Rho-GEFs).,Premkumar L, Bobkov AA, Patel M, Jaroszewski L, Bankston LA, Stec B, Vuori K, Cote JF, Liddington RC J Biol Chem. 2010 Apr 23;285(17):13211-22. Epub 2010 Feb 18. PMID:20167601<ref>PMID:20167601</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3l4c" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20167601}}, adds the Publication Abstract to the page
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*[[Dedicator of cytokinesis protein 3D structures|Dedicator of cytokinesis protein 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20167601 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20167601}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3L4C is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4C OCA].
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==Reference==
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<ref group="xtra">PMID:20167601</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Bankston, L A.]]
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[[Category: Large Structures]]
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[[Category: Bobkov, A A.]]
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[[Category: Bankston LA]]
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[[Category: Cote, J-.F.]]
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[[Category: Bobkov AA]]
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[[Category: Jaroszewski, L.]]
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[[Category: Cote J-F]]
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[[Category: Liddington, R C.]]
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[[Category: Jaroszewski L]]
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[[Category: Patel, M.]]
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[[Category: Liddington RC]]
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[[Category: Premkumar, L.]]
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[[Category: Patel M]]
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[[Category: Stec, B.]]
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[[Category: Premkumar L]]
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[[Category: Vuori, K.]]
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[[Category: Stec B]]
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[[Category: Apoptosis]]
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[[Category: Vuori K]]
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[[Category: Cell adhesion]]
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[[Category: Cell invasion]]
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[[Category: Cell migration]]
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[[Category: Cell polarity]]
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[[Category: Cytoplasm]]
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[[Category: Cytoskeleton]]
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[[Category: Dock1]]
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[[Category: Dock180]]
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[[Category: Guanine exchange factor]]
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[[Category: Guanine-nucleotide releasing factor]]
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[[Category: Membrane]]
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[[Category: Phagocytosis]]
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[[Category: Phosphoinositide specificity]]
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[[Category: Phosphoprotein]]
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[[Category: Rho gtpase]]
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[[Category: Sh3 domain]]
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[[Category: Sh3-binding]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu May 20 09:04:09 2010''
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Current revision

Structural basis of membrane-targeting by Dock180

PDB ID 3l4c

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