3mkh

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{{Seed}}
 
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[[Image:3mkh.jpg|left|200px]]
 
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==Podospora anserina Nitroalkane Oxidase==
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The line below this paragraph, containing "STRUCTURE_3mkh", creates the "Structure Box" on the page.
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<StructureSection load='3mkh' size='340' side='right'caption='[[3mkh]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3mkh]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Podospora_anserina Podospora anserina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MKH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MKH FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.995&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_3mkh| PDB=3mkh | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mkh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mkh OCA], [https://pdbe.org/3mkh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mkh RCSB], [https://www.ebi.ac.uk/pdbsum/3mkh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mkh ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NAO_PODAN NAO_PODAN] Nitroalkane oxidase (NAO) catalyzes the oxidation of nitroalkanes to the corresponding aldehydes or ketones with the release of nitrite and the consumption of molecular oxygen to yield hydrogen peroxide (PubMed:20481475). NAO is unusual, since it catalyzes substrate oxidation by removing a substrate proton to form a carbanion intermediate (PubMed:20481475). Prefers longer nitroalkanes, with 1-nitrohexane having the highest activity (PubMed:20481475).<ref>PMID:20481475</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mk/3mkh_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mkh ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The flavoprotein nitroalkane oxidase (NAO) from Fusarium oxysporum catalyzes the oxidation of primary and secondary nitroalkanes to their respective aldehydes and ketones. Structurally, the enzyme is a member of the acyl-CoA dehydrogenase superfamily. To date no enzymes other than that from F. oxysporum have been annotated as NAOs. To identify additional potential NAOs, the available database was searched for enzymes in which the active site residues Asp402, Arg409, and Ser276 were conserved. Of the several fungal enzymes identified in this fashion, PODANSg2158 from Podospora anserina was selected for expression and characterization. The recombinant enzyme is a flavoprotein with activity on nitroalkanes comparable to the F. oxysporum NAO, although the substrate specificity is somewhat different. Asp399, Arg406, and Ser273 in PODANSg2158 correspond to the active site triad in F. oxysporum NAO. The k(cat)/K(M)-pH profile with nitroethane shows a pK(a) of 5.9 that is assigned to Asp399 as the active site base. Mutation of Asp399 to asparagine decreases the k(cat)/K(M) value for nitroethane over 2 orders of magnitude. The R406K and S373A mutations decrease this kinetic parameter by 64- and 3-fold, respectively. The structure of PODANSg2158 has been determined at a resolution of 2.0 A, confirming its identification as an NAO.
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===Podospora anserina Nitroalkane Oxidase===
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Identification of a Hypothetical Protein from Podospora anserina as a Nitroalkane Oxidase.,Tormos JR, Taylor AB, Daubner SC, Hart PJ, Fitzpatrick PF Biochemistry. 2010 May 27. PMID:20481475<ref>PMID:20481475</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_20481475}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3mkh" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 20481475 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20481475}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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3MKH is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Podospora_anserina Podospora anserina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MKH OCA].
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==Reference==
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<ref group="xtra">PMID:20481475</ref><references group="xtra"/>
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[[Category: Nitroalkane oxidase]]
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[[Category: Podospora anserina]]
[[Category: Podospora anserina]]
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[[Category: Daubner, S C.]]
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[[Category: Daubner SC]]
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[[Category: Fitzpatrick, P F.]]
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[[Category: Fitzpatrick PF]]
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[[Category: Hart, P J]]
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[[Category: Hart PJ]]
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[[Category: Taylor, A B.]]
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[[Category: Taylor AB]]
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[[Category: Tormos, J R.]]
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[[Category: Tormos JR]]
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[[Category: Acyl-coa dehydrogenase]]
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[[Category: Fad]]
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[[Category: Flavoprotein]]
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[[Category: Nitroalkane]]
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[[Category: Oxidoreductase]]
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[[Category: Oxidoreductase flavoenzyme]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 2 08:33:05 2010''
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Current revision

Podospora anserina Nitroalkane Oxidase

PDB ID 3mkh

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