2bka

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[[Image:2bka.gif|left|200px]]<br /><applet load="2bka" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2bka, resolution 1.70&Aring;" />
 
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'''CC3(TIP30)CRYSTAL STRUCURE'''<br />
 
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==Overview==
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==CC3(TIP30)Crystal Structure==
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CC3 (TIP30) is a protein with pro-apoptotic and anti-metastatic, properties. The tumor suppressor effect of CC3 has been suggested to, result from inhibition of nuclear transport by binding to importin betas, or by regulating transcription through interaction in a complex with, co-activator independent of AF-2 function (CIA) and the c-myc gene., Previous biochemical studies indicated that CC3 has protein kinase, activity, and a structural similarity to cAMP-dependent protein kinase, catalytic subunit was proposed. By contrast, bioinformatics studies, suggested a relationship of CC3 to the short chain dehydrogenase reductase, family. To clarify details of the CC3 structural family and ligand binding, properties, we have determined the crystal structure of CC3 at 1.7-A, resolution. CC3 has a short chain dehydrogenase reductase fold and binding, specificity for NADPH, yet it is unlikely to be normally enzymatically, active because it is monomeric. These structural results, in conjunction, with data from earlier mutagenesis work on the nucleotide binding motif, suggest that NADPH binding is important for the biological activity of, CC3, including interaction with importins and with the CIA/c-myc system., CC3 provides an example of the adaptation of a metabolic enzyme fold to, include a regulatory role, as also seen in the case of the NADH-binding, co-repressor CtBP.
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<StructureSection load='2bka' size='340' side='right'caption='[[2bka]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2bka]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BKA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BKA FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bka FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bka OCA], [https://pdbe.org/2bka PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bka RCSB], [https://www.ebi.ac.uk/pdbsum/2bka PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bka ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bk/2bka_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bka ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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CC3 (TIP30) is a protein with pro-apoptotic and anti-metastatic properties. The tumor suppressor effect of CC3 has been suggested to result from inhibition of nuclear transport by binding to importin betas or by regulating transcription through interaction in a complex with co-activator independent of AF-2 function (CIA) and the c-myc gene. Previous biochemical studies indicated that CC3 has protein kinase activity, and a structural similarity to cAMP-dependent protein kinase catalytic subunit was proposed. By contrast, bioinformatics studies suggested a relationship of CC3 to the short chain dehydrogenase reductase family. To clarify details of the CC3 structural family and ligand binding properties, we have determined the crystal structure of CC3 at 1.7-A resolution. CC3 has a short chain dehydrogenase reductase fold and binding specificity for NADPH, yet it is unlikely to be normally enzymatically active because it is monomeric. These structural results, in conjunction with data from earlier mutagenesis work on the nucleotide binding motif, suggest that NADPH binding is important for the biological activity of CC3, including interaction with importins and with the CIA/c-myc system. CC3 provides an example of the adaptation of a metabolic enzyme fold to include a regulatory role, as also seen in the case of the NADH-binding co-repressor CtBP.
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==About this Structure==
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Crystal structure of CC3 (TIP30): implications for its role as a tumor suppressor.,El Omari K, Bird LE, Nichols CE, Ren J, Stammers DK J Biol Chem. 2005 May 6;280(18):18229-36. Epub 2005 Feb 22. PMID:15728189<ref>PMID:15728189</ref>
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2BKA is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with SO4, NDP, PE8 and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Site: <scene name='pdbsite=AC1:So4 Binding Site For Chain A'>AC1</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2BKA OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of CC3 (TIP30): implications for its role as a tumor suppressor., El Omari K, Bird LE, Nichols CE, Ren J, Stammers DK, J Biol Chem. 2005 May 6;280(18):18229-36. Epub 2005 Feb 22. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15728189 15728189]
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</div>
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<div class="pdbe-citations 2bka" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Bird, L.E.]]
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[[Category: Bird LE]]
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[[Category: Nichols, C.E.]]
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[[Category: El Omari K]]
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[[Category: Omari, K.El.]]
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[[Category: Nichols CE]]
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[[Category: Ren, J.]]
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[[Category: Ren J]]
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[[Category: Stammers, D.K.]]
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[[Category: Stammers DK]]
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[[Category: GOL]]
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[[Category: NDP]]
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[[Category: PE8]]
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[[Category: SO4]]
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[[Category: cc3]]
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[[Category: nadph]]
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[[Category: peg600]]
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[[Category: tip30]]
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[[Category: transcription]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 18:49:54 2007''
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Current revision

CC3(TIP30)Crystal Structure

PDB ID 2bka

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