3loc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:56, 13 April 2022) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3loc.png|left|200px]]
 
-
<!--
+
==Crystal structure of putative transcriptional regulator ycdc==
-
The line below this paragraph, containing "STRUCTURE_3loc", creates the "Structure Box" on the page.
+
<StructureSection load='3loc' size='340' side='right'caption='[[3loc]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1pb6 1pb6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LOC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LOC FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3loc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3loc OCA], [https://pdbe.org/3loc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3loc RCSB], [https://www.ebi.ac.uk/pdbsum/3loc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3loc ProSAT]</span></td></tr>
-
-->
+
</table>
-
{{STRUCTURE_3loc| PDB=3loc | SCENE= }}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
===Crystal structure of putative transcriptional regulator ycdc===
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lo/3loc_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
3LOC is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1pb6 1pb6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LOC OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Escherichia coli]]
+
</jmolCheckbox>
-
[[Category: Almo, S C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3loc ConSurf].
-
[[Category: Burley, S K.]]
+
<div style="clear:both"></div>
-
[[Category: Knapik, A A.]]
+
__TOC__
-
[[Category: Mennella, V.]]
+
</StructureSection>
-
[[Category: Minor, W.]]
+
[[Category: Large Structures]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[[Category: Almo SC]]
-
[[Category: Patskovsky, Y V.]]
+
[[Category: Burley SK]]
-
[[Category: Dimer]]
+
[[Category: Knapik AA]]
-
[[Category: Dna-binding]]
+
[[Category: Mennella V]]
-
[[Category: Helix-turn-helix]]
+
[[Category: Minor W]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: Patskovsky YV]]
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Putative transcriptional regulator]]
+
-
[[Category: Repressor]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+
-
[[Category: Uracil]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 16 08:17:45 2010''
+

Current revision

Crystal structure of putative transcriptional regulator ycdc

PDB ID 3loc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools