2ksr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:41, 22 May 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2ksr.png|left|200px]]
 
-
<!--
+
==NMR structures of TM domain of the n-Acetylcholine receptor b2 subunit==
-
The line below this paragraph, containing "STRUCTURE_2ksr", creates the "Structure Box" on the page.
+
<StructureSection load='2ksr' size='340' side='right'caption='[[2ksr]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ksr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KSR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KSR FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ksr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ksr OCA], [https://pdbe.org/2ksr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ksr RCSB], [https://www.ebi.ac.uk/pdbsum/2ksr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ksr ProSAT]</span></td></tr>
-
{{STRUCTURE_2ksr| PDB=2ksr | SCENE= }}
+
</table>
 +
== Disease ==
 +
[https://www.uniprot.org/uniprot/ACHB2_HUMAN ACHB2_HUMAN] Defects in CHRNB2 are the cause of nocturnal frontal lobe epilepsy type 3 (ENFL3) [MIM:[https://omim.org/entry/605375 605375]. ENFL3 is an autosomal dominant epilepsy characterized by nocturnal seizures with hyperkinetic automatisms and poorly organized stereotyped movements.<ref>PMID:11062464</ref> <ref>PMID:11104662</ref>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ACHB2_HUMAN ACHB2_HUMAN] After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane permeable to sodiun ions.<ref>PMID:22361591</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/2ksr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ksr ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Nicotinic acetylcholine receptors (nAChRs) are involved in fast synaptic transmission in the central and peripheral nervous system. Among the many different types of subunits in nAChRs, the beta2 subunit often combines with the alpha4 subunit to form alpha4beta2 pentameric channels, the most abundant subtype of nAChRs in the brain. Besides computational predictions, there is limited experimental data available on the structure of the beta2 subunit. Using high-resolution NMR spectroscopy, we solved the structure of the entire transmembrane domain (TM1234) of the beta2 subunit. We found that TM1234 formed a four-helix bundle in the absence of the extracellular and intracellular domains. The structure exhibited many similarities to those previously determined for the Torpedo nAChR and the bacterial ion channel GLIC. We also assessed the influence of the fourth transmembrane helix (TM4) on the rest of the domain. Although secondary structures and tertiary arrangements were similar, the addition of TM4 caused dramatic changes in TM3 dynamics and subtle changes in TM1 and TM2. Taken together, this study suggests that the structures of the transmembrane domains of these proteins are largely shaped by determinants inherent in their sequence, but their dynamics may be sensitive to modulation by tertiary and quaternary contacts.
-
===NMR structures of TM domain of the n-Acetylcholine receptor b2 subunit===
+
NMR structure of the transmembrane domain of the n-acetylcholine receptor beta2 subunit.,Bondarenko V, Tillman T, Xu Y, Tang P Biochim Biophys Acta. 2010 Aug;1798(8):1608-14. Epub 2010 May 2. PMID:20441771<ref>PMID:20441771</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_20441771}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2ksr" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20441771 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_20441771}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
2KSR is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KSR OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:20441771</ref><references group="xtra"/>
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Bondarenko, V.]]
+
[[Category: Large Structures]]
-
[[Category: Tang, P.]]
+
[[Category: Bondarenko V]]
-
[[Category: Tillman, T.]]
+
[[Category: Tang P]]
-
[[Category: Xu, Y.]]
+
[[Category: Tillman T]]
-
[[Category: Cell junction]]
+
[[Category: Xu Y]]
-
[[Category: Cell membrane]]
+
-
[[Category: Disease mutation]]
+
-
[[Category: Disulfide bond]]
+
-
[[Category: Epilepsy]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Hfip]]
+
-
[[Category: Ion transport]]
+
-
[[Category: Ionic channel]]
+
-
[[Category: Membrane]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Nicotinic acetylcholine receptor]]
+
-
[[Category: Postsynaptic cell membrane]]
+
-
[[Category: Synapse]]
+
-
[[Category: Transmembrane]]
+
-
[[Category: Transmembrane domain]]
+
-
[[Category: Transport]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 30 13:19:54 2010''
+

Current revision

NMR structures of TM domain of the n-Acetylcholine receptor b2 subunit

PDB ID 2ksr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ksr"
Personal tools