3m8l

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{{Seed}}
 
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[[Image:3m8l.jpg|left|200px]]
 
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==Crystal Structure Analysis of the Feline Calicivirus Capsid Protein==
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The line below this paragraph, containing "STRUCTURE_3m8l", creates the "Structure Box" on the page.
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<StructureSection load='3m8l' size='340' side='right'caption='[[3m8l]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3m8l]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Feline_calicivirus Feline calicivirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M8L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M8L FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.4&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m8l OCA], [https://pdbe.org/3m8l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m8l RCSB], [https://www.ebi.ac.uk/pdbsum/3m8l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m8l ProSAT]</span></td></tr>
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{{STRUCTURE_3m8l| PDB=3m8l | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A2T4Q0_9CALI A2T4Q0_9CALI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m8/3m8l_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m8l ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Nonenveloped viral capsids are metastable structures that undergo conformational changes during virus entry that lead to interactions of the capsid or capsid fragments with the cell membrane. For members of the Caliciviridae, neither the nature of these structural changes in the capsid nor the factor(s) responsible for inducing these changes is known. Feline junctional adhesion molecule A (fJAM-A) mediates the attachment and infectious viral entry of feline calicivirus (FCV). Here, we show that the infectivity of some FCV isolates is neutralized following incubation with the soluble receptor at 37 degrees C. We used this property to select mutants resistant to preincubation with the soluble receptor. We isolated and sequenced 24 soluble receptor-resistant (srr) mutants and characterized the growth properties and receptor-binding activities of eight mutants. The location of the mutations within the capsid structure of FCV was mapped using a new 3.6-A structure of native FCV. The srr mutations mapped to the surface of the P2 domain were buried at the protruding domain dimer interface or were present in inaccessible regions of the capsid protein. Coupled with data showing that both the parental FCV and the srr mutants underwent increases in hydrophobicity upon incubation with the soluble receptor at 37 degrees C, these findings indicate that FCV likely undergoes conformational change upon interaction with its receptor. Changes in FCV capsid conformation following its interaction with fJAM-A may be important for subsequent interactions of the capsid with cellular membranes, membrane penetration, and genome delivery.
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===Crystal Structure Analysis of the Feline Calicivirus Capsid Protein===
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Conformational changes in the capsid of a calicivirus upon interaction with its functional receptor.,Ossiboff RJ, Zhou Y, Lightfoot PJ, Prasad BV, Parker JS J Virol. 2010 Jun;84(11):5550-64. Epub 2010 Mar 31. PMID:20357100<ref>PMID:20357100</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3m8l" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20357100}}, adds the Publication Abstract to the page
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20357100 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20357100}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3M8L is a 3 chains structure with sequences from [http://en.wikipedia.org/wiki/Feline_calicivirus Feline calicivirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M8L OCA].
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==Reference==
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<ref group="xtra">PMID:20357100</ref><references group="xtra"/>
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[[Category: Feline calicivirus]]
[[Category: Feline calicivirus]]
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[[Category: Prasad, B V.V.]]
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[[Category: Large Structures]]
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[[Category: Zhou, Y.]]
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[[Category: Prasad BVV]]
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[[Category: Fcv-5 capsid]]
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[[Category: Zhou Y]]
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[[Category: Icosahedral virus]]
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[[Category: Virus]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 30 13:48:22 2010''
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Current revision

Crystal Structure Analysis of the Feline Calicivirus Capsid Protein

PDB ID 3m8l

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