3mh5

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{{Seed}}
 
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[[Image:3mh5.jpg|left|200px]]
 
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==HtrA proteases are activated by a conserved mechanism that can be triggered by distinct molecular cues==
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The line below this paragraph, containing "STRUCTURE_3mh5", creates the "Structure Box" on the page.
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<StructureSection load='3mh5' size='340' side='right'caption='[[3mh5]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3mh5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MH5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MH5 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DFP:DIISOPROPYL+PHOSPHONATE'>DFP</scene></td></tr>
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{{STRUCTURE_3mh5| PDB=3mh5 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mh5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mh5 OCA], [https://pdbe.org/3mh5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mh5 RCSB], [https://www.ebi.ac.uk/pdbsum/3mh5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mh5 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DEGP_ECOLI DEGP_ECOLI] DegP acts as a chaperone at low temperatures but switches to a peptidase (heat shock protein) at higher temperatures. It degrades transiently denatured and unfolded proteins which accumulate in the periplasm following heat shock or other stress conditions. DegP is efficient with Val-Xaa and Ile-Xaa peptide bonds, suggesting a preference for beta-branched side chain amino acids. Only unfolded proteins devoid of disulfide bonds appear capable of being cleaved, thereby preventing non-specific proteolysis of folded proteins. Its proteolytic activity is essential for the survival of cells at elevated temperatures. It can degrade IciA, ada, casein, globin and PapA. DegP shares specificity with DegQ. DegP is also involved in the biogenesis of partially folded outer-membrane proteins (OMP).<ref>PMID:2180903</ref> <ref>PMID:8830688</ref> <ref>PMID:10319814</ref> <ref>PMID:18505836</ref> <ref>PMID:12730160</ref> <ref>PMID:18496527</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mh/3mh5_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mh5 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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HtrA proteases are tightly regulated proteolytic assemblies that are essential for maintaining protein homeostasis in extracytosolic compartments. Though HtrA proteases have been characterized in detail, their precise molecular mechanism for switching between different functional states is still unknown. To address this, we carried out biochemical and structural studies of DegP from Escherichia coli. We show that effector-peptide binding to the PDZ domain of DegP induces oligomer conversion from resting hexameric DegP6 into proteolytically active 12-mers and 24-mers (DegP12/24). Moreover, our data demonstrate that a specific protease loop (L3) functions as a conserved molecular switch of HtrA proteases. L3 senses the activation signal-that is, the repositioned PDZ domain of substrate-engaged DegP12/24 or the binding of allosteric effectors to regulatory HtrA proteases such as DegS-and transmits this information to the active site. Implications for protein quality control and regulation of oligomeric enzymes are discussed.
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===HtrA proteases are activated by a conserved mechanism that can be triggered by distinct molecular cues===
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HtrA proteases have a conserved activation mechanism that can be triggered by distinct molecular cues.,Krojer T, Sawa J, Huber R, Clausen T Nat Struct Mol Biol. 2010 Jul;17(7):844-52. Epub 2010 Jun 27. PMID:20581825<ref>PMID:20581825</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3mh5" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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3MH5 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MH5 OCA].
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*[[Heat Shock Protein structures|Heat Shock Protein structures]]
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[[Category: Escherichia coli]]
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== References ==
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[[Category: Clausen, T.]]
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<references/>
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[[Category: Huber, R.]]
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__TOC__
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[[Category: Krojer, T.]]
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</StructureSection>
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[[Category: Sawa, J.]]
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[[Category: Escherichia coli K-12]]
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[[Category: Degp]]
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[[Category: Large Structures]]
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[[Category: Htra]]
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[[Category: Clausen T]]
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[[Category: Hydrolase]]
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[[Category: Huber R]]
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[[Category: Protease]]
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[[Category: Krojer T]]
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[[Category: Sawa J]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 30 13:48:47 2010''
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Current revision

HtrA proteases are activated by a conserved mechanism that can be triggered by distinct molecular cues

PDB ID 3mh5

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