3kie

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{{Seed}}
 
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[[Image:3kie.png|left|200px]]
 
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==Crystal structure of adeno-associated virus serotype 3B==
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The line below this paragraph, containing "STRUCTURE_3kie", creates the "Structure Box" on the page.
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<StructureSection load='3kie' size='340' side='right'caption='[[3kie]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3kie]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Adeno-associated_virus_3B Adeno-associated virus 3B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KIE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KIE FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D5M:2-DEOXYADENOSINE-5-MONOPHOSPHATE'>D5M</scene></td></tr>
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{{STRUCTURE_3kie| PDB=3kie | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kie FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kie OCA], [https://pdbe.org/3kie PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kie RCSB], [https://www.ebi.ac.uk/pdbsum/3kie PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kie ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/O56139_9VIRU O56139_9VIRU]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ki/3kie_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kie ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Adeno-associated viruses (AAVs) are leading candidate vectors for human gene therapy. AAV serotypes have broad cellular tropism and use a variety of cellular receptors. AAV serotype 3 binds to heparan sulfate proteoglycan prior to cell entry and is serologically distinct from other serotypes. The capsid features that distinguish AAV-3B from other serotypes are poorly understood. The structure of AAV-3B has been determined to 2.6A resolution from twinned crystals of an infectious virus. The most distinctive structural features are located in regions implicated in receptor and antibody binding, providing insights into the cell entry mechanisms and antigenic nature of AAVs. We show that AAV-3B has a lower affinity for heparin than AAV-2, which can be rationalized by the distinct features of the AAV-3B capsid. The structure of AAV-3B provides an additional foundation for the future engineering of improved gene therapy vectors with modified receptor binding or antigenic characteristics.
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===Crystal structure of adeno-associated virus serotype 3B===
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The structure of adeno-associated virus serotype 3B (AAV-3B): insights into receptor binding and immune evasion.,Lerch TF, Xie Q, Chapman MS Virology. 2010 Jul 20;403(1):26-36. Epub 2010 May 4. PMID:20444480<ref>PMID:20444480</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3kie" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20444480}}, adds the Publication Abstract to the page
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20444480 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20444480}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Adeno-associated virus 3B]]
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3KIE is a 20 chains structure with sequences from [http://en.wikipedia.org/wiki/Adeno-associated_virus_3b Adeno-associated virus 3b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KIE OCA].
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[[Category: Large Structures]]
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[[Category: Chapman MS]]
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==Reference==
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[[Category: Lerch TF]]
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<ref group="xtra">PMID:20444480</ref><references group="xtra"/>
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[[Category: Xie Q]]
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[[Category: Adeno-associated virus 3b]]
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[[Category: Chapman, M S.]]
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[[Category: Lerch, T F.]]
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[[Category: Xie, Q.]]
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[[Category: Beta barrel]]
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[[Category: Capsid]]
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[[Category: Dependovirus]]
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[[Category: Icosahedral virus]]
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[[Category: Parvovirus]]
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[[Category: Single-stranded]]
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[[Category: Virus]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 14 15:53:37 2010''
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Current revision

Crystal structure of adeno-associated virus serotype 3B

PDB ID 3kie

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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