This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3l4e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:49, 2 January 2019) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3l4e.jpg|left|200px]]
 
-
<!--
+
==1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e==
-
The line below this paragraph, containing "STRUCTURE_3l4e", creates the "Structure Box" on the page.
+
<StructureSection load='3l4e' size='340' side='right' caption='[[3l4e]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3l4e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lismo Lismo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L4E FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3l4e| PDB=3l4e | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lmo0363 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=169963 LISMO])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l4e OCA], [http://pdbe.org/3l4e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l4e RCSB], [http://www.ebi.ac.uk/pdbsum/3l4e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l4e ProSAT]</span></td></tr>
-
===1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3L4E is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_monocytogenes Listeria monocytogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4E OCA].
+
<jmolCheckbox>
-
[[Category: Listeria monocytogenes]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l4/3l4e_consurf.spt"</scriptWhenChecked>
-
[[Category: Anderson, W F.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Brunzelle, J S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
</jmolCheckbox>
-
[[Category: Onopriyenko, O.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l4e ConSurf].
-
[[Category: Savchenko, A.]]
+
<div style="clear:both"></div>
-
[[Category: Center for structural genomics of infectious disease]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Lismo]]
 +
[[Category: Anderson, W F]]
 +
[[Category: Brunzelle, J S]]
 +
[[Category: Structural genomic]]
 +
[[Category: Onopriyenko, O]]
 +
[[Category: Savchenko, A]]
[[Category: Csgid]]
[[Category: Csgid]]
[[Category: Department of health and human service]]
[[Category: Department of health and human service]]
Line 31: Line 36:
[[Category: Serine protease]]
[[Category: Serine protease]]
[[Category: Similar to peptidase e]]
[[Category: Similar to peptidase e]]
-
[[Category: Structural genomic]]
 
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 14 16:19:26 2010''
 

Current revision

1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e

3l4e, resolution 1.50Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools