This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2g3b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:39, 29 December 2021) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2g3b.png|left|200px]]
 
-
<!--
+
==Crystal structure of putative TetR-family transcriptional regulator from Rhodococcus sp.==
-
The line below this paragraph, containing "STRUCTURE_2g3b", creates the "Structure Box" on the page.
+
<StructureSection load='2g3b' size='340' side='right'caption='[[2g3b]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2g3b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhojr Rhojr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G3B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G3B FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2g3b| PDB=2g3b | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g3b OCA], [https://pdbe.org/2g3b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g3b RCSB], [https://www.ebi.ac.uk/pdbsum/2g3b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g3b ProSAT], [https://www.topsan.org/Proteins/MCSG/2g3b TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of putative TetR-family transcriptional regulator from Rhodococcus sp.===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2G3B is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Rhodococcus_jostii_rha1 Rhodococcus jostii rha1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G3B OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g3/2g3b_consurf.spt"</scriptWhenChecked>
-
[[Category: Rhodococcus jostii rha1]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Chruszcz, M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Cymborowski, M.]]
+
</jmolCheckbox>
-
[[Category: Edwards, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g3b ConSurf].
-
[[Category: Evdokimova, E.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: Kagan, O.]]
+
</StructureSection>
-
[[Category: Koclega, K D.]]
+
[[Category: Large Structures]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Rhojr]]
-
[[Category: Minor, W.]]
+
[[Category: Chruszcz, M]]
-
[[Category: Savchenko, A.]]
+
[[Category: Cymborowski, M]]
-
[[Category: Wang, S.]]
+
[[Category: Edwards, A]]
 +
[[Category: Evdokimova, E]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kagan, O]]
 +
[[Category: Koclega, K D]]
 +
[[Category: Structural genomic]]
 +
[[Category: Minor, W]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Wang, S]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
[[Category: Tetr-family]]
[[Category: Tetr-family]]
[[Category: Transcription]]
[[Category: Transcription]]
[[Category: Transcription regulator]]
[[Category: Transcription regulator]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 21 09:50:21 2010''
 

Current revision

Crystal structure of putative TetR-family transcriptional regulator from Rhodococcus sp.

PDB ID 2g3b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools