3nk7

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{{Seed}}
 
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[[Image:3nk7.jpg|left|200px]]
 
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==Structure of the Nosiheptide-resistance methyltransferase S-adenosyl-L-methionine Complex==
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The line below this paragraph, containing "STRUCTURE_3nk7", creates the "Structure Box" on the page.
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<StructureSection load='3nk7' size='340' side='right'caption='[[3nk7]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3nk7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_actuosus Streptomyces actuosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NK7 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
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{{STRUCTURE_3nk7| PDB=3nk7 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nk7 OCA], [https://pdbe.org/3nk7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nk7 RCSB], [https://www.ebi.ac.uk/pdbsum/3nk7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nk7 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NSHR_STRAS NSHR_STRAS] Specifically methylates the adenosine-1067 in 23S ribosomal RNA. Confers resistance to antibiotic nosiheptide.<ref>PMID:20550164</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nk/3nk7_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3nk7 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Nosiheptide-resistance methyltransferase (NHR) of Streptomyces actuosus is a class IV methyltransferase of the SpoU family and methylates 23S rRNA at nucleotide Adenosine corresponding to A1067 in Escherichia Coli. Such methylation is essential for resistance against nosiheptide, a sulphur peptide antibiotic, which is produced by the nosiheptide -producing strain, Streptomyces actuosus. Here, we report the crystal structures of NHR and NHR in complex with SAM (S-adenosyl-L-methionine) at 2.0 and 2.1 A resolution, respectively. NHR forms a functional homodimer and dimerization is required for methyltransferase activity. The monomeric NHR is comprised of N-terminal RNA binding domain (NTD) and C-terminal catalytic domain (CTD). Overall, the structure of NHR suggests that the methyltransferase activity is achieved by "reading" the RNA substrate with NTD and "adding" methyl group using CTD. Comprehensive mutagenesis and methyltransferase activity assays reveal critical regions for SAM binding in CTD and loops (L1 and L3) essential for RNA recognition in NTD. Finally, the catalytic mechanism and structural model that NHR recognize 23S rRNA is proposed based on the structural and biochemical analyses. Thus, our systematic structural studies reveal the substrate recognition and modification by the nosiheptide-resistance methyltransferase.
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===Structure of the Nosiheptide-resistance methyltransferase S-adenosyl-L-methionine Complex===
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Crystal Structure of the Nosiheptide Resistance Methyltransferase of Streptomyces actuosus.,Yang H, Wang Z, Shen Y, Wang P, Jia X, Zhao L, Zhou P, Gong R, Li Z, Yang Y, Chen D, Murchie A, Xu Y Biochemistry. 2010 Jun 15. PMID:20550164<ref>PMID:20550164</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_20550164}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3nk7" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 20550164 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20550164}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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3NK7 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Streptomyces_actuosus Streptomyces actuosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NK7 OCA].
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==Reference==
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<ref group="xtra">PMID:20550164</ref><references group="xtra"/>
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[[Category: Streptomyces actuosus]]
[[Category: Streptomyces actuosus]]
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[[Category: Murchie, A.]]
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[[Category: Murchie A]]
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[[Category: Shen, Y.]]
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[[Category: Shen Y]]
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[[Category: Wang, P.]]
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[[Category: Wang P]]
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[[Category: Wang, Z.]]
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[[Category: Wang Z]]
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[[Category: Xu, Y.]]
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[[Category: Xu Y]]
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[[Category: Yang, H.]]
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[[Category: Yang H]]
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[[Category: 23s rrna methyltransferase]]
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[[Category: Nosiheptide]]
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[[Category: Nosiheptide-resistance methyltransferase]]
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[[Category: Sam]]
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[[Category: Transferase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 21 10:21:57 2010''
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Current revision

Structure of the Nosiheptide-resistance methyltransferase S-adenosyl-L-methionine Complex

PDB ID 3nk7

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