2ffj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:59, 30 October 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2ffj.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF a DUF89 family protein (AF1104) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 2.45 A RESOLUTION==
-
The line below this paragraph, containing "STRUCTURE_2ffj", creates the "Structure Box" on the page.
+
<StructureSection load='2ffj' size='340' side='right'caption='[[2ffj]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ffj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus fulgidus DSM 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FFJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2ffj| PDB=2ffj | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ffj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ffj OCA], [https://pdbe.org/2ffj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ffj RCSB], [https://www.ebi.ac.uk/pdbsum/2ffj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ffj ProSAT], [https://www.topsan.org/Proteins/JCSG/2ffj TOPSAN]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURE OF a DUF89 family protein (AF1104) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 2.45 A RESOLUTION===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/D89S1_ARCFU D89S1_ARCFU] Metal-dependent phosphatase with probable damage-control functions (By similarity). Could hydrolyze oxidatively damaged purine nucleotides or their biosynthetic intermediates (By similarity).[UniProtKB:O59272]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2FFJ is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FFJ OCA].
+
Check<jmol>
-
[[Category: Archaeoglobus fulgidus dsm 4304]]
+
<jmolCheckbox>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ff/2ffj_consurf.spt"</scriptWhenChecked>
-
[[Category: Jcsg]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Joint center for structural genomic]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Protein structure initiative]]
+
</jmolCheckbox>
-
[[Category: Psi-2]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ffj ConSurf].
-
[[Category: Structural genomic]]
+
<div style="clear:both"></div>
-
[[Category: Unknown function]]
+
__TOC__
-
 
+
</StructureSection>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 28 12:16:57 2010''
+
[[Category: Archaeoglobus fulgidus DSM 4304]]
 +
[[Category: Large Structures]]

Current revision

CRYSTAL STRUCTURE OF a DUF89 family protein (AF1104) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 2.45 A RESOLUTION

PDB ID 2ffj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ffj"
Personal tools