This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3aii

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:00, 13 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3aii.jpg|left|200px]]
 
-
<!--
+
==Archaeal non-discriminating glutamyl-tRNA synthetase from Methanothermobacter thermautotrophicus==
-
The line below this paragraph, containing "STRUCTURE_3aii", creates the "Structure Box" on the page.
+
<StructureSection load='3aii' size='340' side='right'caption='[[3aii]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3aii]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus_str._Delta_H Methanothermobacter thermautotrophicus str. Delta H]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AII OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AII FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_3aii| PDB=3aii | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aii FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aii OCA], [https://pdbe.org/3aii PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aii RCSB], [https://www.ebi.ac.uk/pdbsum/3aii PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aii ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SYE_METTH SYE_METTH] Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).[HAMAP-Rule:MF_00022]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ai/3aii_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3aii ConSurf].
 +
<div style="clear:both"></div>
-
===Archaeal non-discriminating glutamyl-tRNA synthetase from Methanothermobacter thermautotrophicus===
+
==See Also==
-
 
+
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_20601684}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 20601684 is the PubMed ID number.
+
[[Category: Methanothermobacter thermautotrophicus str. Delta H]]
-
-->
+
[[Category: Ishitani R]]
-
{{ABSTRACT_PUBMED_20601684}}
+
[[Category: Nureki O]]
-
 
+
-
==About this Structure==
+
-
3AII is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AII OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:20601684</ref><references group="xtra"/>
+
-
[[Category: Glutamate--tRNA ligase]]
+
-
[[Category: Methanothermobacter thermautotrophicus]]
+
-
[[Category: Ishitani, R.]]
+
-
[[Category: Nureki, O.]]
+
-
[[Category: Amino-acyl trna synthetase]]
+
-
[[Category: Ligase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 4 09:06:09 2010''
+

Current revision

Archaeal non-discriminating glutamyl-tRNA synthetase from Methanothermobacter thermautotrophicus

PDB ID 3aii

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools