3h4z

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{{Seed}}
 
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[[Image:3h4z.png|left|200px]]
 
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==Crystal Structure of an MBP-Der p 7 fusion protein==
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The line below this paragraph, containing "STRUCTURE_3h4z", creates the "Structure Box" on the page.
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<StructureSection load='3h4z' size='340' side='right'caption='[[3h4z]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3h4z]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Dermatophagoides_pteronyssinus Dermatophagoides pteronyssinus] and [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H4Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H4Z FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>
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{{STRUCTURE_3h4z| PDB=3h4z | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h4z OCA], [https://pdbe.org/3h4z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h4z RCSB], [https://www.ebi.ac.uk/pdbsum/3h4z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h4z ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.[https://www.uniprot.org/uniprot/ALL7_DERPT ALL7_DERPT]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h4/3h4z_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h4z ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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BACKGROUND: Sensitization to house dust mite allergens is strongly correlated with asthma. Der p 7 elicits strong IgE antibody and T-cell responses in patients with mite allergy. However, the structure and biological function of this important allergen are unknown. Allergen function might contribute to allergenicity, as shown for the protease activity of group 1 mite allergens and the interaction with the innate immune system by group 2 mite allergens. OBJECTIVE: We sought to determine the crystal structure of Der p 7 and to investigate its biological function. METHODS: X-ray crystallography was used to determine the Der p 7 structure. Nuclear magnetic resonance analysis and biochemical assays were used to examine the binding of Der p 7 to predicted ligands. RESULTS: Der p 7 has an elongated structure, with two 4-stranded antiparallel beta-sheets that wrap around a long C-terminal helix. The fold of Der p 7 is similar to that of LPS-binding protein (LBP), which interacts with Toll-like receptors after binding LPS and other bacterially derived lipid ligands. Nuclear magnetic resonance and biochemical assays indicate that Der p 7 does not bind LPS but binds with weak affinity to the bacterial lipopeptide polymyxin B in the predicted binding site of Der p 7. CONCLUSIONS: Der p 7 binds a bacterially derived lipid product, a common feature of some allergens. The finding that the group 7, as well as the group 2, mite allergens are structurally similar to different proteins in the Toll-like receptor pathway further strengthens the connections between dust mites, innate immunity, and allergy.
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===Crystal Structure of an MBP-Der p 7 fusion protein===
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The structure of the dust mite allergen Der p 7 reveals similarities to innate immune proteins.,Mueller GA, Edwards LL, Aloor JJ, Fessler MB, Glesner J, Pomes A, Chapman MD, London RE, Pedersen LC J Allergy Clin Immunol. 2010 Apr;125(4):909-917.e4. Epub 2010 Mar 11. PMID:20226507<ref>PMID:20226507</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_20226507}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3h4z" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 20226507 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20226507}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Dermatophagoides pteronyssinus]]
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3H4Z is a 3 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli,_dermatophagoides_pteronyssinus Escherichia coli, dermatophagoides pteronyssinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H4Z OCA].
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[[Category: Escherichia coli]]
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[[Category: Large Structures]]
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==Reference==
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[[Category: London RE]]
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<ref group="xtra">PMID:20226507</ref><references group="xtra"/>
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[[Category: Mueller GA]]
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[[Category: Escherichia coli, dermatophagoides pteronyssinus]]
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[[Category: Pedersen LC]]
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[[Category: London, R E.]]
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[[Category: Mueller, G A.]]
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[[Category: Pedersen, L C.]]
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[[Category: Aha1/bpi domain-like]]
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[[Category: Allergen]]
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[[Category: Derp7]]
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[[Category: Mbp fusion]]
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[[Category: Sugar transport]]
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[[Category: Super roll]]
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[[Category: Transport]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Aug 12 00:05:08 2010''
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Current revision

Crystal Structure of an MBP-Der p 7 fusion protein

PDB ID 3h4z

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