3mkw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:25, 21 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3mkw.png|left|200px]]
 
-
<!--
+
==Structure of sopB(155-272)-18mer complex, I23 form==
-
The line below this paragraph, containing "STRUCTURE_3mkw", creates the "Structure Box" on the page.
+
<StructureSection load='3mkw' size='340' side='right'caption='[[3mkw]], [[Resolution|resolution]] 2.99&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3mkw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MKW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MKW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.99&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3mkw| PDB=3mkw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mkw OCA], [https://pdbe.org/3mkw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mkw RCSB], [https://www.ebi.ac.uk/pdbsum/3mkw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mkw ProSAT]</span></td></tr>
-
 
+
</table>
-
===Structure of sopB(155-272)-18mer complex, I23 form===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/SOPB_ECOLI SOPB_ECOLI] Control of plasmid partitioning; required to recognize the cis-acting. Binds specifically with the DNA segment containing the sopC region. SopB is trans-acting.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_20236989}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20236989 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mk/3mkw_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_20236989}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
3MKW is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MKW OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mkw ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:20236989</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Escherichia coli]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Piro, K.]]
+
[[Category: Large Structures]]
-
[[Category: Schumacher, M A.]]
+
[[Category: Piro K]]
-
[[Category: Xu, W.]]
+
[[Category: Schumacher MA]]
-
[[Category: Centromere]]
+
[[Category: Xu W]]
-
[[Category: Dna binding protein-dna complex]]
+
-
[[Category: F plasmid]]
+
-
[[Category: Segregation]]
+
-
[[Category: Sopb]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Aug 12 00:11:27 2010''
+

Current revision

Structure of sopB(155-272)-18mer complex, I23 form

PDB ID 3mkw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3mkw"
Personal tools