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3ogo

From Proteopedia

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(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3ogo", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
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[[Image:3ogo.jpg|left|200px]]
 
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==Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212==
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The line below this paragraph, containing "STRUCTURE_3ogo", creates the "Structure Box" on the page.
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<StructureSection load='3ogo' size='340' side='right'caption='[[3ogo]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3ogo]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria] and [https://en.wikipedia.org/wiki/Camelus_dromedarius Camelus dromedarius]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3miq 3miq]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OGO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OGO FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>
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{{STRUCTURE_3ogo| PDB=3ogo | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ogo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ogo OCA], [https://pdbe.org/3ogo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ogo RCSB], [https://www.ebi.ac.uk/pdbsum/3ogo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ogo ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/og/3ogo_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ogo ConSurf].
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<div style="clear:both"></div>
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===Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212===
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==See Also==
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*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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3OGO is a 8 chains structure with sequences from [http://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria] and [http://en.wikipedia.org/wiki/Camelus_dromedarius Camelus dromedarius]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3miq 3miq]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OGO OCA].
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[[Category: Aequorea victoria]]
[[Category: Aequorea victoria]]
[[Category: Camelus dromedarius]]
[[Category: Camelus dromedarius]]
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[[Category: Alexandrov, K.]]
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[[Category: Large Structures]]
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[[Category: Collins, B M.]]
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[[Category: Alexandrov K]]
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[[Category: Kovtun, O.]]
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[[Category: Collins BM]]
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[[Category: Kubala, M H.]]
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[[Category: Kovtun O]]
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[[Category: Antibody]]
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[[Category: Kubala MH]]
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[[Category: Beta-barrel]]
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[[Category: Fluorescent protein-immune system complex]]
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[[Category: Gfp]]
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[[Category: Gfp-nanobody]]
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[[Category: Luminescent protein-immune system complex]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 25 08:44:17 2010''
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Current revision

Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212

PDB ID 3ogo

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