This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3obf
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3obf.jpg|left|200px]] | ||
| - | + | ==Crystal structure of putative transcriptional regulator, IclR family; targeted domain 129...302== | |
| - | + | <StructureSection load='3obf' size='340' side='right' caption='[[3obf]], [[Resolution|resolution]] 2.16Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3obf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arthrobacter_aurescens_tc1 Arthrobacter aurescens tc1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OBF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OBF FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AAur_3821 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290340 Arthrobacter aurescens TC1])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3obf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3obf OCA], [http://pdbe.org/3obf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3obf RCSB], [http://www.ebi.ac.uk/pdbsum/3obf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3obf ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | == | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/3obf_consurf.spt"</scriptWhenChecked> | |
| - | [[Category: Arthrobacter aurescens]] | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Chang, C | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Clancy, S | + | </jmolCheckbox> |
| - | [[Category: Joachimiak, A | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3obf ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| - | [[Category: Tesar, C | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Arthrobacter aurescens tc1]] | ||
| + | [[Category: Chang, C]] | ||
| + | [[Category: Clancy, S]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Tesar, C]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Transcription regulator]] | [[Category: Transcription regulator]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 25 09:03:34 2010'' | ||
Current revision
Crystal structure of putative transcriptional regulator, IclR family; targeted domain 129...302
| |||||||||||
