3oca

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{{Seed}}
 
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[[Image:3oca.png|left|200px]]
 
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==Crystal structure of peptide deformylase from Ehrlichia chaffeensis==
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The line below this paragraph, containing "STRUCTURE_3oca", creates the "Structure Box" on the page.
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<StructureSection load='3oca' size='340' side='right'caption='[[3oca]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3oca]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ehrlichia_chaffeensis_str._Arkansas Ehrlichia chaffeensis str. Arkansas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OCA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OCA FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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{{STRUCTURE_3oca| PDB=3oca | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oca OCA], [https://pdbe.org/3oca PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oca RCSB], [https://www.ebi.ac.uk/pdbsum/3oca PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oca ProSAT]</span></td></tr>
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</table>
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===Crystal structure of peptide deformylase from Ehrlichia chaffeensis===
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== Function ==
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[https://www.uniprot.org/uniprot/Q2GI30_EHRCR Q2GI30_EHRCR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]
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== Evolutionary Conservation ==
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==About this Structure==
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[[Image:Consurf_key_small.gif|200px|right]]
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3OCA is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Ehrlichia_chaffeensis Ehrlichia chaffeensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OCA OCA].
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Check<jmol>
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[[Category: Ehrlichia chaffeensis]]
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<jmolCheckbox>
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[[Category: Peptide deformylase]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oc/3oca_consurf.spt"</scriptWhenChecked>
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[[Category: SSGCID, Seattle Structural Genomics Center for Infectious Disease.]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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[[Category: Ehrlichia chaffeensis]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Hydrolase]]
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</jmolCheckbox>
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[[Category: Peptide deformylase]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3oca ConSurf].
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[[Category: Seattle structural genomics center for infectious disease]]
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<div style="clear:both"></div>
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[[Category: Ssgcid]]
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__TOC__
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[[Category: Structural genomic]]
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</StructureSection>
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[[Category: Ehrlichia chaffeensis str. Arkansas]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 15 10:17:22 2010''
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[[Category: Large Structures]]

Current revision

Crystal structure of peptide deformylase from Ehrlichia chaffeensis

PDB ID 3oca

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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