3oby

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:33, 20 March 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3oby.png|left|200px]]
 
-
<!--
+
==Crystal structure of Archaeoglobus fulgidus Pelota reveals inter-domain structural plasticity==
-
The line below this paragraph, containing "STRUCTURE_3oby", creates the "Structure Box" on the page.
+
<StructureSection load='3oby' size='340' side='right'caption='[[3oby]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3oby]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OBY FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oby OCA], [https://pdbe.org/3oby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oby RCSB], [https://www.ebi.ac.uk/pdbsum/3oby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oby ProSAT]</span></td></tr>
-
{{STRUCTURE_3oby| PDB=3oby | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of Archaeoglobus fulgidus Pelota reveals inter-domain structural plasticity===
+
[https://www.uniprot.org/uniprot/PELO_ARCFU PELO_ARCFU] May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity (By similarity).
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_20682285}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20682285 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/3oby_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_20682285}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3oby ConSurf].
-
3OBY is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OBY OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:20682285</ref><references group="xtra"/>
+
[[Category: Archaeoglobus fulgidus]]
[[Category: Archaeoglobus fulgidus]]
-
[[Category: Jang, J Y.]]
+
[[Category: Large Structures]]
-
[[Category: Kim, S J.]]
+
[[Category: Jang JY]]
-
[[Category: Lee, H H.]]
+
[[Category: Kim SJ]]
-
[[Category: Suh, S W.]]
+
[[Category: Lee HH]]
-
[[Category: Yoon, H J.]]
+
[[Category: Suh SW]]
-
[[Category: Hydrolase]]
+
[[Category: Yoon H-J]]
-
[[Category: Sm fold]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 15 10:22:42 2010''
+

Current revision

Crystal structure of Archaeoglobus fulgidus Pelota reveals inter-domain structural plasticity

PDB ID 3oby

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3oby"
Personal tools